Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.2e-150 537.0 368 100.0
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.2e-123 447.2 359 86.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.8e-59 233.4 353 45.9
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.2e-59 232.3 351 44.7
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.4e-58 231.1 352 45.7
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.3e-58 230.3 377 47.5
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 2.0e-57 227.3 345 43.5
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.6e-57 226.9 345 43.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 3.4e-57 226.5 351 47.0
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.4e-57 226.1 347 44.1
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 3.7e-56 223.0 367 42.8
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 4.9e-56 222.6 342 45.9
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 8.3e-56 221.9 351 44.2
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 7.0e-55 218.8 347 43.5
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 9.2e-55 218.4 331 50.5
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.2e-54 218.0 327 44.3
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.6e-54 217.6 351 43.3
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.1e-54 217.2 360 49.4
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 2.7e-54 216.9 327 48.9
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 6.0e-54 215.7 351 45.9
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.7e-53 214.2 330 44.8
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 1.7e-53 214.2 358 40.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 6.6e-53 212.2 340 41.5
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 6.6e-53 212.2 326 56.7
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.1e-52 211.5 367 51.5
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.5e-52 211.1 350 48.3
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-52 211.1 322 46.3
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.9e-52 210.7 362 44.2
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.3e-52 209.9 359 40.4
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.3e-52 209.9 325 43.7
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 4.3e-52 209.5 330 46.1
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 5.6e-52 209.1 311 44.4
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 5.6e-52 209.1 357 47.3
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 9.5e-52 208.4 324 52.5
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-51 208.0 363 39.7
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-51 207.2 322 45.7
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.1e-51 207.2 354 50.8
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.8e-51 206.8 314 43.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.7e-51 206.1 313 43.5
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 8.1e-51 205.3 337 47.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.1e-50 204.9 383 37.9
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.1e-50 204.9 362 40.6
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.4e-50 204.5 319 42.0
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.8e-50 204.1 311 43.1
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.8e-50 204.1 311 43.1
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.3e-50 203.8 313 44.7
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.1e-50 203.4 325 43.1
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 4.0e-50 203.0 329 40.4
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.2e-50 202.6 358 39.1
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-49 200.3 324 50.0
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 2.6e-49 200.3 361 41.0
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.4e-49 199.9 342 52.3
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 4.4e-49 199.5 331 43.2
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 5.8e-49 199.1 327 49.5
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 9.9e-49 198.4 326 50.6
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 9.9e-49 198.4 325 55.4
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.3e-48 198.0 364 38.2
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.7e-48 197.6 346 39.9
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.2e-48 197.2 370 38.6
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 3.7e-48 196.4 376 47.9
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 1.4e-47 194.5 324 40.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.9e-47 194.1 324 51.2
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 3.2e-47 193.4 318 50.0
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 9.2e-47 191.8 381 38.8
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 2.7e-46 190.3 324 50.9
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 2.7e-46 190.3 324 50.9
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.7e-46 190.3 325 49.5
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 3.5e-46 189.9 324 50.9
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 3.5e-46 189.9 174 62.6
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.0e-45 188.3 326 47.5
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.7e-45 187.6 302 53.6
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.0e-45 186.8 343 54.2
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 3.9e-45 186.4 321 48.0
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 5.1e-45 186.0 320 50.6
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.1e-45 186.0 328 47.6
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-45 185.7 325 42.8
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.6e-45 185.7 328 42.1
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 6.6e-45 185.7 323 50.5
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 8.6e-45 185.3 331 38.1
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 8.6e-45 185.3 378 48.7
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-44 184.1 328 41.5
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.9e-44 184.1 331 51.1
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 7.3e-44 182.2 329 48.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 7.3e-44 182.2 349 49.9
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.2e-43 181.4 380 37.4
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.6e-43 181.0 333 48.9
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.6e-43 181.0 369 45.5
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 2.1e-43 180.6 333 52.6
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.1e-43 180.6 174 60.3
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 6.2e-43 179.1 347 52.2
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 6.2e-43 179.1 334 39.2
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 8.1e-43 178.7 302 52.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.8e-42 177.6 361 45.2
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.8e-42 177.6 354 48.0
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.8e-42 177.6 333 50.5
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.4e-42 177.2 319 49.2
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 3.1e-42 176.8 324 53.4
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 3.1e-42 176.8 368 38.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.1e-42 176.8 326 45.1
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 4.0e-42 176.4 330 49.4
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.0e-42 176.4 357 43.1
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.2e-42 176.0 333 49.5
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 6.8e-42 175.6 323 51.1
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 6.8e-42 175.6 323 50.2
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 8.9e-42 175.3 324 49.7
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.2e-41 174.9 326 51.5
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 3.4e-41 173.3 321 47.4
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.4e-41 173.3 357 38.4
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 7.6e-41 172.2 370 47.3
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 3.8e-40 169.9 303 51.8
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-39 168.3 342 43.9
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.4e-39 167.9 347 49.9
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.4e-39 167.2 335 46.9
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.6e-38 164.5 346 35.8
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.6e-38 164.5 359 51.8
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 3.5e-38 163.3 340 48.2
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 6.0e-38 162.5 353 46.7
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 6.0e-38 162.5 357 36.7
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-37 161.4 342 42.7
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.7e-37 161.0 302 49.7
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.5e-36 157.9 357 35.6
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.5e-36 157.1 323 48.0
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 5.6e-36 156.0 324 48.5
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.3e-36 155.6 118 70.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 7.3e-36 155.6 334 48.5
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.6e-35 153.3 335 45.4
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 3.1e-34 150.2 307 47.2
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 4.0e-34 149.8 308 47.7
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 5.3e-34 149.4 328 43.9
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.3e-28 129.8 450 29.3
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.6e-27 126.7 331 44.7
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.4e-26 124.8 353 41.9
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.0e-26 123.2 329 31.0
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 5.3e-26 122.9 100 64.0
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 6.9e-26 122.5 259 36.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 4.9e-24 116.3 325 48.3
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 9.6e-20 102.1 348 27.3
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 4.8e-19 99.8 77 67.5
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 8.1e-19 99.0 123 45.5
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-17 94.0 68 72.1
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.3e-16 91.7 62 75.8
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 3.8e-16 90.1 69 66.7
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.4e-16 89.0 66 69.7
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 8.4e-16 89.0 353 28.6
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 5.1e-13 79.7 344 34.9
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-12 78.6 68 66.2
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-12 78.6 57 75.4
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.9e-12 77.8 327 26.0
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-12 77.4 89 57.3
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.5e-12 77.4 68 66.2
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.4e-12 75.9 89 56.2
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.3e-11 75.1 103 44.7
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.4e-10 70.9 51 72.5
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.0e-10 70.1 47 78.7
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.9e-10 69.3 46 80.4
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.0e-10 68.9 47 76.6
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.2e-09 68.6 46 80.4
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-09 67.4 48 72.9
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-09 67.4 47 74.5
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 1.0e-08 65.5 49 65.3
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.8e-08 63.5 229 28.4
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.1e-07 62.0 316 35.1
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 7.1e-07 59.3 56 57.1
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 9.3e-07 58.9 95 38.9
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-06 58.2 89 49.4
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-06 57.8 38 81.6
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 2.1e-06 57.8 72 41.7
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-06 57.0 38 81.6
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 7.9e-06 55.8 36 83.3


User provided reference genes

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