Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.4e-276 954.9 483 100.0
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 6.3e-245 850.5 463 92.2
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.1e-161 573.9 482 58.9
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.4e-151 540.4 487 58.3
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.2e-150 537.3 482 56.8
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 4.2e-148 528.9 487 56.1
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.7e-147 526.2 487 55.9
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 2.5e-140 503.1 487 54.4
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.7e-139 499.6 489 54.4
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.5e-139 499.2 481 54.9
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 7.9e-139 498.0 489 54.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.8e-138 496.9 482 54.8
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.8e-138 496.9 495 54.1
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 3.0e-138 496.1 486 52.7
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 3.9e-138 495.7 482 55.2
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 5.1e-138 495.4 491 53.0
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.5e-137 493.0 488 55.3
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.5e-137 493.0 483 53.2
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 4.3e-137 492.3 438 58.0
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 4.3e-137 492.3 487 52.8
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 7.4e-137 491.5 488 52.0
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.6e-136 490.3 484 53.7
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.8e-136 488.8 487 52.4
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 8.2e-136 488.0 487 52.2
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.2e-134 484.2 494 53.4
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.6e-134 483.0 481 53.6
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 3.8e-133 479.2 482 52.3
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 5.5e-132 475.3 481 53.0
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 7.2e-132 474.9 483 52.8
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.6e-131 473.8 485 51.5
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.6e-131 473.8 487 51.5
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 7.9e-131 471.5 483 52.8
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.4e-130 470.7 489 53.0
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 2.3e-130 469.9 480 52.7
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.3e-128 464.2 483 50.7
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.3e-128 464.2 492 50.4
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.8e-128 463.0 440 54.3
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.7e-128 462.6 480 51.5
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 8.2e-128 461.5 622 44.2
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.4e-127 460.7 453 55.2
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.4e-127 460.7 485 52.6
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 1.4e-127 460.7 485 52.4
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.1e-127 459.5 481 51.6
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 6.9e-127 458.4 481 51.4
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.4e-126 456.1 481 51.4
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.0e-125 454.5 481 51.1
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.2e-125 453.4 485 50.9
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 5.0e-125 452.2 484 51.4
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 5.0e-125 452.2 489 49.3
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 8.5e-125 451.4 455 51.4
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.9e-124 450.3 479 50.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.5e-124 449.9 481 50.9
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 2.5e-124 449.9 482 51.5
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 7.2e-124 448.4 510 49.8
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 7.2e-124 448.4 486 50.8
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 2.1e-123 446.8 479 50.5
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 6.1e-123 445.3 449 52.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.8e-122 443.7 488 49.0
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 3.0e-122 443.0 480 49.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 5.1e-122 442.2 488 50.2
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 4.4e-121 439.1 468 49.8
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 4.4e-121 439.1 486 50.0
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 6.3e-120 435.3 483 49.3
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 1.4e-119 434.1 427 52.5
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.8e-119 433.7 438 52.7
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 3.1e-119 433.0 486 49.8
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.5e-118 430.6 484 49.8
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 1.5e-118 430.6 494 49.0
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.6e-118 429.9 470 48.9
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 3.8e-117 426.0 438 50.5
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 3.8e-117 426.0 479 48.2
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 6.5e-117 425.2 483 47.8
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 6.5e-117 425.2 457 47.9
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 6.5e-117 425.2 423 52.5
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 8.5e-117 424.9 483 48.7
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 4.2e-116 422.5 505 47.5
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 7.2e-116 421.8 438 50.5
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 9.4e-116 421.4 481 48.4
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.2e-115 421.0 438 51.1
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.6e-115 420.6 438 51.1
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 4.7e-115 419.1 500 46.6
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 6.1e-115 418.7 481 48.2
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 8.0e-115 418.3 438 50.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.0e-114 417.9 438 50.9
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.8e-114 417.2 500 46.6
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.6e-113 413.3 429 51.3
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 6.3e-112 408.7 438 49.8
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 3.1e-111 406.4 487 47.2
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 7.0e-111 405.2 486 45.7
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.0e-110 403.7 483 47.0
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 2.6e-110 403.3 388 52.6
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.5e-108 397.5 495 46.7
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 8.0e-107 391.7 390 50.8
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 6.3e-104 382.1 439 47.8
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.7e-101 374.0 353 53.3
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.7e-99 365.9 325 58.2
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.1e-95 353.2 327 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.8e-93 346.3 494 40.5
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 2.5e-92 343.6 503 41.0
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 7.2e-92 342.0 436 44.5
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 7.5e-89 332.0 312 54.8
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 9.8e-89 331.6 441 42.6
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.6e-83 314.3 324 50.9
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.1e-82 310.1 395 43.5
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.5e-81 307.8 279 58.8
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 4.4e-81 306.2 481 38.5
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.9e-80 303.5 331 49.5
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 2.5e-76 290.4 263 54.4
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.4e-74 284.6 506 37.0
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 4.0e-74 283.1 280 52.9
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.3e-72 278.1 265 58.1
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.3e-64 251.5 325 45.5
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 8.6e-61 238.8 418 35.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-57 228.4 202 55.4
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 8.7e-53 212.2 278 45.3
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.5e-52 210.7 195 55.9
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 7.3e-52 209.1 160 63.1
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.4e-47 194.1 158 60.8
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.4e-47 193.0 159 61.0
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 3.6e-43 180.3 155 58.7
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 5.4e-39 166.4 272 38.2
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 7.4e-36 156.0 194 46.4
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 2.8e-35 154.1 193 44.6
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.4e-34 151.8 121 64.5
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 3.9e-29 133.7 119 55.5
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 8.7e-29 132.5 146 48.6
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.1e-28 132.1 197 42.1
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.5e-17 95.1 108 47.2
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.6e-14 84.0 144 38.9
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 7.9e-14 82.8 124 41.1
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 6.7e-13 79.7 99 46.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.3e-12 77.0 95 46.3
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.3e-12 77.0 95 46.3
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.0e-08 65.9 106 36.8


User provided reference genes

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