Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 5.9e-57 224.2 130 100.0
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 4.5e-49 198.0 130 90.8
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.1e-25 119.4 131 55.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 2.7e-25 119.0 131 55.7
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 7.8e-25 117.5 128 48.4
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.0e-24 115.5 129 47.3
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.0e-24 115.5 129 58.9
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 5.1e-24 114.8 128 57.8
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 5.1e-24 114.8 130 59.2
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 6.6e-24 114.4 131 49.6
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 8.6e-24 114.0 130 58.5
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.1e-23 113.6 130 61.5
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.9e-23 112.8 131 47.3
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.5e-23 112.5 131 47.3
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.5e-23 112.5 131 47.3
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 4.3e-23 111.7 128 53.9
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 5.6e-23 111.3 129 47.3
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 5.6e-23 111.3 129 47.3
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 9.5e-23 110.5 130 47.7
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 9.5e-23 110.5 133 55.6
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 2.8e-22 109.0 128 42.2
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 8.1e-22 107.5 129 58.1
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-21 107.1 129 46.5
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.4e-21 106.7 129 45.7
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.4e-21 106.7 131 56.5
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.8e-21 106.3 131 45.8
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 1.8e-21 106.3 129 46.5
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 2.4e-21 105.9 130 44.6
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 5.2e-21 104.8 125 55.2
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.2e-20 103.6 128 44.5
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 2.6e-20 102.4 130 47.7
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 3.4e-20 102.1 129 46.5
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 4.4e-20 101.7 129 55.8
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.4e-20 101.7 136 52.9
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 4.4e-20 101.7 129 58.1
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 7.6e-20 100.9 105 57.1
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 7.6e-20 100.9 105 57.1
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 7.6e-20 100.9 123 56.1
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 2.2e-19 99.4 141 39.7
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 2.9e-19 99.0 129 43.4
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 2.9e-19 99.0 136 52.2
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 2.9e-19 99.0 132 42.4
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 3.8e-19 98.6 132 47.0
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 3.8e-19 98.6 91 71.4
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 4.9e-19 98.2 129 44.2
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 4.9e-19 98.2 130 42.3
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 6.4e-19 97.8 130 55.4
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 8.4e-19 97.4 132 47.7
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 8.4e-19 97.4 103 62.1
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 1.1e-18 97.1 129 42.6
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.1e-18 97.1 118 46.6
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 1.4e-18 96.7 85 72.9
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 1.4e-18 96.7 85 72.9
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.4e-18 96.7 129 48.8
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.9e-18 96.3 128 49.2
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.4e-18 95.9 125 52.8
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 4.2e-18 95.1 127 43.3
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 4.2e-18 95.1 88 70.5
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 5.4e-18 94.7 130 53.1
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 7.1e-18 94.4 130 50.0
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 7.1e-18 94.4 130 50.0
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 9.2e-18 94.0 89 52.8
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 1.6e-17 93.2 129 51.2
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 1.6e-17 93.2 99 47.5
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.1e-17 92.8 136 46.3
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 3.5e-17 92.0 133 56.4
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.5e-17 92.0 129 41.1
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.5e-17 92.0 130 50.0
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.6e-17 91.7 127 38.6
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.6e-17 91.7 130 53.1
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 6.0e-17 91.3 85 51.8
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 7.8e-17 90.9 135 48.9
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-16 90.1 128 39.1
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 1.3e-16 90.1 112 55.4
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 1.7e-16 89.7 85 68.2
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 1.7e-16 89.7 104 59.6
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 1.7e-16 89.7 85 68.2
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 1.7e-16 89.7 130 52.3
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.7e-16 89.7 148 38.5
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 3.0e-16 89.0 132 53.0
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 3.0e-16 89.0 129 52.7
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 3.9e-16 88.6 130 45.4
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 5.1e-16 88.2 89 49.4
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 5.1e-16 88.2 132 51.5
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 6.6e-16 87.8 85 69.4
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 6.6e-16 87.8 130 50.0
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.1e-15 87.0 85 67.1
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-15 87.0 87 49.4
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 1.1e-15 87.0 126 54.8
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.9e-15 86.3 130 44.6
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 2.5e-15 85.9 78 52.6
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.3e-15 85.5 131 41.2
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 3.3e-15 85.5 128 39.1
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 4.3e-15 85.1 86 51.2
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 4.3e-15 85.1 131 41.2
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 5.6e-15 84.7 85 69.4
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 5.6e-15 84.7 134 39.6
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 7.3e-15 84.3 82 68.3
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 9.6e-15 84.0 132 39.4
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 9.6e-15 84.0 128 49.2
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 1.3e-14 83.6 129 39.5
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.6e-14 83.2 84 65.5
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 2.1e-14 82.8 123 46.3
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 2.8e-14 82.4 104 44.2
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.8e-14 82.4 94 50.0
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 2.8e-14 82.4 130 38.5
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 3.6e-14 82.0 130 40.8
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 6.2e-14 81.3 85 67.1
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 6.2e-14 81.3 136 39.0
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 8.1e-14 80.9 124 41.1
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 8.1e-14 80.9 133 39.8
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.4e-13 80.1 86 65.1
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 1.8e-13 79.7 85 67.1
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 1.8e-13 79.7 85 67.1
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.8e-13 79.7 90 47.8
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.8e-13 79.7 94 41.5
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.8e-13 79.7 143 42.7
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 2.4e-13 79.3 131 45.8
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 6.9e-13 77.8 130 37.7
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 9.0e-13 77.4 74 50.0
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.2e-12 77.0 123 34.1
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.2e-12 77.0 86 66.3
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.5e-12 76.6 129 45.0
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.5e-12 76.6 107 41.1
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 2.6e-12 75.9 84 45.2
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 3.4e-12 75.5 133 38.3
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 3.4e-12 75.5 125 44.0
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 3.4e-12 75.5 97 44.3
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 5.8e-12 74.7 85 63.5
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 5.8e-12 74.7 123 46.3
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 7.6e-12 74.3 115 49.6
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 9.9e-12 73.9 85 57.6
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 9.9e-12 73.9 123 43.9
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 9.9e-12 73.9 133 46.6
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.7e-11 73.2 85 61.2
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 1.7e-11 73.2 142 36.6
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 2.2e-11 72.8 97 40.2
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 3.8e-11 72.0 126 39.7
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 3.8e-11 72.0 123 45.5
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 4.9e-11 71.6 85 61.2
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 6.4e-11 71.2 125 39.2
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 8.4e-11 70.9 126 35.7
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.1e-10 70.5 80 46.2
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.4e-10 70.1 132 34.1
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.4e-10 70.1 84 45.2
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 1.9e-10 69.7 132 45.5
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.9e-10 69.7 84 45.2
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 1.9e-10 69.7 94 55.3
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 1.9e-10 69.7 123 34.1
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 2.4e-10 69.3 94 56.4
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.2e-10 68.9 92 41.3
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 3.2e-10 68.9 84 44.0
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 3.2e-10 68.9 89 55.1
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 4.2e-10 68.6 136 42.6
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 5.4e-10 68.2 102 38.2
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 5.4e-10 68.2 85 62.4
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 5.4e-10 68.2 126 48.4
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 9.3e-10 67.4 69 47.8
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 9.3e-10 67.4 83 61.4
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 1.2e-09 67.0 122 43.4
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 1.2e-09 67.0 129 31.8
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 1.6e-09 66.6 138 36.2
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 2.1e-09 66.2 80 63.8
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 2.1e-09 66.2 95 51.6
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 3.5e-09 65.5 131 43.5
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 3.5e-09 65.5 140 35.0
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.0e-09 64.7 122 42.6
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.0e-09 64.7 52 55.8
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.0e-09 64.7 122 42.6
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 1.0e-08 63.9 68 45.6
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 1.7e-08 63.2 131 34.4
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 2.3e-08 62.8 77 41.6
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.5e-07 60.1 81 40.7
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.5e-07 60.1 59 49.2
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.3e-07 58.5 51 51.0
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 3.6e-06 55.5 58 46.6


User provided reference genes

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