Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.8e-93 345.9 169 100.0
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.9e-79 299.3 151 96.7
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 4.5e-73 278.1 150 89.3
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 7.7e-73 277.3 151 88.1
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.0e-72 276.9 151 88.7
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.7e-72 276.2 151 87.4
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 6.5e-72 274.2 150 88.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 6.5e-72 274.2 151 87.4
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 6.5e-72 274.2 151 88.1
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.4e-71 273.1 152 86.2
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.9e-71 272.7 151 88.1
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.9e-71 272.7 151 86.1
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 1.9e-71 272.7 151 86.1
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.9e-71 272.7 151 86.1
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 2.5e-71 272.3 151 86.1
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.5e-71 272.3 151 88.1
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 5.5e-71 271.2 151 86.1
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 5.5e-71 271.2 151 86.8
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 9.4e-71 270.4 151 84.8
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 9.4e-71 270.4 151 88.1
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 9.4e-71 270.4 151 86.8
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 1.2e-70 270.0 151 85.4
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.2e-70 270.0 151 86.1
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.2e-70 270.0 151 87.4
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.6e-70 269.6 151 85.4
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 2.1e-70 269.2 151 86.1
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.1e-70 269.2 166 77.7
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 2.1e-70 269.2 151 85.4
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 2.1e-70 269.2 150 86.0
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.7e-70 268.9 151 85.4
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 3.6e-70 268.5 151 86.1
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 4.7e-70 268.1 151 86.1
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 4.7e-70 268.1 151 86.1
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 6.1e-70 267.7 151 85.4
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 6.1e-70 267.7 151 85.4
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 6.1e-70 267.7 151 86.1
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 7.9e-70 267.3 151 82.8
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 7.9e-70 267.3 151 85.4
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.0e-69 266.9 151 85.4
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-69 266.5 151 86.1
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.8e-69 266.2 151 86.1
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.8e-69 266.2 151 84.8
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.8e-69 266.2 151 84.1
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 1.8e-69 266.2 151 85.4
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 2.3e-69 265.8 151 85.4
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 3.0e-69 265.4 151 84.8
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.0e-69 265.4 151 84.1
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.0e-69 265.4 151 85.4
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 3.0e-69 265.4 151 83.4
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 3.9e-69 265.0 151 84.8
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 5.1e-69 264.6 151 83.4
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 5.1e-69 264.6 151 84.8
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 5.1e-69 264.6 151 83.4
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 5.1e-69 264.6 151 84.8
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 6.7e-69 264.2 151 83.4
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 6.7e-69 264.2 151 84.1
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 8.8e-69 263.8 151 84.8
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 2.6e-68 262.3 151 84.1
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.6e-68 262.3 151 83.4
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.6e-68 262.3 151 83.4
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 2.6e-68 262.3 150 83.3
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 3.3e-68 261.9 151 84.1
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 3.3e-68 261.9 151 84.1
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.3e-68 261.9 151 84.1
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 3.3e-68 261.9 151 82.1
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.4e-68 261.5 150 84.7
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.7e-68 261.2 151 84.1
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 7.4e-68 260.8 150 83.3
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 7.4e-68 260.8 151 84.1
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 7.4e-68 260.8 150 82.7
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 9.7e-68 260.4 151 82.1
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 9.7e-68 260.4 151 82.1
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 9.7e-68 260.4 151 81.5
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 9.7e-68 260.4 150 83.3
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.3e-67 260.0 151 83.4
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.7e-67 259.6 151 82.1
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 1.7e-67 259.6 150 82.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-67 259.2 151 83.4
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.8e-67 258.8 151 84.8
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 3.7e-67 258.5 150 82.0
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 3.7e-67 258.5 150 82.0
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 3.7e-67 258.5 151 83.4
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.7e-67 258.5 151 81.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 4.8e-67 258.1 147 83.7
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 8.2e-67 257.3 150 81.3
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.8e-66 256.1 151 82.1
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.4e-66 255.8 166 77.7
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.2e-65 253.4 151 81.5
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.6e-65 252.3 151 80.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 2.6e-65 252.3 150 80.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 2.6e-65 252.3 150 80.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 2.6e-65 252.3 150 80.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 2.6e-65 252.3 150 80.7
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 5.9e-65 251.1 150 80.0
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.3e-64 250.0 151 80.8
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 3.8e-64 248.4 150 80.0
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 6.5e-64 247.7 202 64.9
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 1.4e-63 246.5 157 78.3
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.7e-62 242.3 151 76.2
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 6.1e-62 241.1 151 75.5
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 8.8e-61 237.3 153 75.2
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.5e-60 236.5 127 88.2
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 3.3e-60 235.3 126 88.1
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 4.4e-60 235.0 127 86.6
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 4.4e-60 235.0 130 86.2
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 2.2e-59 232.6 146 75.3
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.4e-58 229.9 134 82.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.8e-58 229.6 130 82.3
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.8e-58 229.6 130 82.3
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.0e-57 226.1 128 85.2
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 3.5e-57 225.3 130 81.5
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 2.9e-56 222.2 127 81.9
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.2e-54 216.9 151 66.9
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 1.6e-54 216.5 129 79.1
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 4.0e-53 211.8 153 66.7
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.2e-53 211.5 163 66.9
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 8.8e-53 210.7 151 63.6
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.5e-52 209.9 151 64.2
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.4e-50 203.4 126 78.6
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.0e-49 199.5 114 86.8
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.9e-47 193.0 132 71.2
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.2e-46 190.3 128 71.9
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.6e-46 188.7 161 59.0
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 6.1e-46 188.0 112 83.9
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.2e-44 183.7 111 82.0
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.4e-44 181.8 130 68.5
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 2.2e-43 179.5 151 62.3
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 5.4e-42 174.9 131 70.2
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-38 163.3 92 85.9
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.9e-37 157.5 89 87.6
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.0e-36 156.4 96 79.2
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-35 153.7 92 82.6
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.9e-35 151.8 95 81.1
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.3e-35 151.0 107 75.7
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.4e-34 149.4 90 81.1
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.4e-34 148.3 103 72.8
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.5e-33 145.6 80 81.2
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 7.8e-33 144.4 93 72.0
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 2.3e-32 142.9 88 78.4
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 5.2e-29 131.7 75 84.0
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.1e-26 124.0 80 73.8
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.9e-26 123.2 77 79.2
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.4e-26 122.9 99 60.6
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 3.9e-24 115.5 67 74.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.0e-20 103.2 90 58.9
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 2.6e-20 102.8 153 36.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 4.9e-19 98.6 57 78.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 2.6e-12 76.3 37 86.5


User provided reference genes

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