Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.0e-81 304.7 151 100.0
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.9e-76 288.1 150 94.0
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 6.5e-47 191.0 150 60.7
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.1e-46 190.3 150 62.0
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.6e-45 186.4 150 60.0
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.1e-45 186.0 150 59.3
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 3.5e-45 185.3 150 58.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 3.5e-45 185.3 150 58.0
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 3.5e-45 185.3 150 59.3
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 1.3e-44 183.3 150 56.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 1.8e-44 183.0 150 56.7
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.9e-44 181.8 150 62.7
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 3.9e-44 181.8 150 60.7
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 8.7e-44 180.6 150 57.3
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.1e-43 180.3 150 56.7
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.9e-43 179.5 150 57.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 4.3e-43 178.3 150 58.0
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 9.6e-43 177.2 150 58.7
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.8e-42 174.9 150 58.7
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 4.8e-42 174.9 150 56.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 6.3e-42 174.5 150 57.3
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.2e-42 174.1 150 56.0
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 8.2e-42 174.1 150 58.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.1e-41 173.7 150 56.7
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.1e-41 173.7 150 55.3
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.8e-41 172.9 150 54.0
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 1.8e-41 172.9 151 58.9
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.1e-41 172.2 150 55.3
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.1e-41 172.2 150 56.7
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.1e-41 172.2 150 56.0
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.1e-41 172.2 150 56.7
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.1e-41 172.2 150 56.7
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.1e-41 172.2 150 55.3
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.9e-41 171.0 150 55.3
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 6.9e-41 171.0 150 55.3
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 9.0e-41 170.6 150 56.0
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-40 170.2 150 56.0
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.5e-40 168.3 150 50.7
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.5e-40 168.3 150 55.3
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.9e-40 167.9 150 54.0
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 7.6e-40 167.5 132 59.8
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.0e-39 167.2 150 57.3
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.2e-39 166.0 150 53.3
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.2e-39 166.0 150 54.7
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 3.8e-39 165.2 150 54.0
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.0e-39 164.9 150 52.7
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.0e-39 164.9 150 53.3
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 6.5e-39 164.5 151 52.3
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.4e-38 163.3 150 52.7
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 4.2e-38 161.8 151 53.6
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.2e-38 161.8 149 51.0
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 7.2e-38 161.0 150 52.0
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 9.3e-38 160.6 150 50.7
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 9.3e-38 160.6 152 55.9
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 2.7e-37 159.1 150 51.3
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 3.6e-37 158.7 150 55.3
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 3.6e-37 158.7 150 52.0
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 3.6e-37 158.7 150 52.0
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 4.6e-37 158.3 150 54.0
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.3e-36 156.8 150 51.3
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.8e-36 156.4 153 54.9
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.8e-36 156.4 149 54.4
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.3e-36 156.0 150 52.7
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 3.0e-36 155.6 151 55.6
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 5.1e-36 154.8 150 54.7
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.1e-35 153.7 150 49.3
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 5.7e-35 151.4 150 54.0
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 7.4e-35 151.0 152 52.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 7.4e-35 151.0 150 51.3
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-34 150.2 150 48.7
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.6e-34 149.8 150 50.7
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.6e-34 149.8 151 51.7
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.2e-34 149.4 151 51.0
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.8e-34 149.1 150 48.0
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.7e-34 148.7 150 50.0
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.7e-34 148.7 151 51.0
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 6.3e-34 147.9 151 50.3
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 8.2e-34 147.5 153 48.4
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.1e-33 147.1 143 49.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.1e-33 147.1 153 52.9
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.1e-33 147.1 150 46.7
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.4e-33 146.7 150 50.7
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-33 146.7 150 46.7
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.4e-33 146.7 122 56.6
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.1e-33 145.6 143 50.3
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.1e-33 145.6 116 56.0
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.1e-33 145.2 150 47.3
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 4.1e-33 145.2 152 52.0
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.9e-33 144.4 150 48.0
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 6.9e-33 144.4 150 48.0
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 9.1e-33 144.1 152 49.3
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 9.1e-33 144.1 152 49.3
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.1e-33 144.1 145 49.7
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 9.1e-33 144.1 150 46.0
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.2e-32 143.7 144 50.7
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.5e-32 143.3 129 55.8
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 1.5e-32 143.3 125 55.2
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.5e-32 143.3 154 48.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.5e-32 143.3 138 55.1
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.5e-32 143.3 152 51.3
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.0e-32 142.9 147 49.0
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.6e-32 142.5 150 46.7
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 5.9e-32 141.4 117 57.3
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 7.7e-32 141.0 150 49.3
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 7.7e-32 141.0 109 60.6
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.3e-31 140.2 150 47.3
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.3e-31 140.2 125 54.4
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.3e-31 140.2 126 54.0
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.7e-31 139.8 151 49.0
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.7e-31 139.8 150 48.0
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 2.2e-31 139.4 150 47.3
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.2e-31 139.4 150 49.3
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.2e-31 139.4 150 46.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.9e-31 139.0 150 48.0
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 3.8e-31 138.7 151 49.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.0e-31 138.3 131 52.7
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 5.0e-31 138.3 149 45.6
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 5.0e-31 138.3 150 48.0
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 5.0e-31 138.3 150 48.0
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 6.5e-31 137.9 151 48.3
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 6.5e-31 137.9 151 48.3
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 8.5e-31 137.5 143 48.3
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 8.5e-31 137.5 150 46.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.1e-30 137.1 150 46.0
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.4e-30 136.7 154 46.1
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.2e-30 135.6 150 48.0
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 3.2e-30 135.6 142 45.8
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 7.2e-30 134.4 147 46.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 7.2e-30 134.4 122 54.1
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 9.4e-30 134.0 133 54.1
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 9.4e-30 134.0 146 47.3
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.4e-30 134.0 150 46.7
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-29 133.7 126 48.4
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.3e-28 129.4 151 41.7
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 3.9e-28 128.6 109 53.2
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.7e-28 127.9 99 64.6
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 6.7e-28 127.9 150 45.3
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.0e-27 126.3 150 40.7
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 4.4e-27 125.2 134 45.5
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 5.7e-27 124.8 110 55.5
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 9.7e-27 124.0 128 48.4
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.7e-27 124.0 124 49.2
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 6.9e-25 117.9 112 50.9
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.0e-24 116.3 143 45.5
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 3.4e-24 115.5 88 63.6
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 5.0e-23 111.7 138 42.0
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 3.0e-20 102.4 112 45.5
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.2e-20 101.7 81 63.0
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 7.4e-19 97.8 94 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 4.5e-16 88.6 90 43.3
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 4.5e-16 88.6 103 43.7
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.6e-13 80.1 92 37.0
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.7e-12 74.7 75 52.0
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 8.8e-12 74.3 104 32.7
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.7e-11 71.6 65 55.4
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 3.5e-08 62.4 65 47.7


User provided reference genes

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