Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 0.0e+00 1163.7 698 100.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.3e-271 938.3 679 85.9
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 7.6e-66 256.1 641 35.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.3e-57 228.8 664 34.9
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.2e-49 201.4 735 31.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.4e-48 198.7 671 32.8
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 6.6e-46 189.9 722 32.4
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.1e-43 182.6 724 31.1
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 9.9e-42 176.0 814 31.8
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 4.6e-39 167.2 668 31.6
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-38 165.6 681 29.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.5e-37 162.2 727 30.7
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 7.4e-37 159.8 700 30.9
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.3e-36 159.1 726 31.0
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.1e-35 156.0 703 31.0
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.1e-35 154.5 518 37.1
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.8e-34 150.2 633 30.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.2e-33 148.3 688 29.1
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-33 148.3 643 30.3
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.8e-33 147.5 824 29.2
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.1e-32 146.0 753 29.7
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.4e-32 145.6 688 31.0
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.4e-32 145.6 807 28.3
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.9e-32 145.2 805 29.7
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.5e-32 144.8 654 31.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 3.2e-32 144.4 778 28.5
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 3.2e-32 144.4 696 29.0
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.2e-32 144.1 702 29.2
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.2e-32 144.1 753 28.2
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 4.2e-32 144.1 688 29.1
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.5e-32 143.7 801 27.8
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.2e-31 142.5 800 29.1
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 3.5e-31 141.0 812 31.3
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.6e-31 140.6 637 29.0
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.0e-31 140.2 748 29.5
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 7.9e-31 139.8 618 31.2
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.0e-30 139.4 696 29.5
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.3e-30 139.0 697 30.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 6.7e-30 136.7 806 28.5
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.1e-29 136.0 810 27.0
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.5e-29 135.6 710 30.0
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-29 133.3 808 27.4
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-29 133.3 808 27.4
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 7.4e-29 133.3 705 28.4
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.8e-28 131.3 761 28.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.8e-28 131.3 722 28.3
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 4.8e-28 130.6 756 29.2
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.3e-28 130.2 809 28.3
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-27 128.6 758 28.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.4e-27 128.3 576 31.2
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.1e-27 127.5 763 29.2
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.1e-27 127.5 808 27.1
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.9e-27 126.7 659 30.5
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.5e-26 125.6 630 29.5
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.0e-26 125.2 719 28.0
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.0e-26 125.2 713 30.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 3.4e-26 124.4 683 28.4
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 7.6e-26 123.2 719 29.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.3e-25 122.5 643 33.9
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.7e-25 122.1 812 27.8
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.2e-25 121.7 767 27.1
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.8e-25 120.9 667 29.2
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 3.8e-25 120.9 654 28.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 3.8e-25 120.9 756 29.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.1e-24 119.4 699 28.5
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.4e-24 119.0 769 28.0
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.9e-24 118.6 686 28.7
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.5e-24 118.2 726 28.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.2e-24 117.5 727 27.6
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 9.3e-24 116.3 715 28.7
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.1e-23 115.2 615 29.9
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.6e-23 114.4 692 26.9
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 3.6e-23 114.4 729 26.9
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 7.9e-23 113.2 596 29.9
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.3e-22 112.5 724 28.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.3e-22 112.5 782 26.5
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.3e-22 111.7 751 27.4
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.0e-22 111.3 669 28.1
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 3.9e-22 110.9 604 29.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 8.7e-22 109.8 739 26.9
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.5e-21 109.0 657 27.5
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.9e-21 108.6 796 27.6
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 3.3e-21 107.8 650 32.9
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 9.7e-21 106.3 829 27.1
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.6e-20 105.5 774 26.5
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 4.8e-20 104.0 794 27.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 8.2e-20 103.2 629 29.7
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.4e-19 102.4 805 28.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.8e-19 102.1 861 26.5
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.8e-19 102.1 655 27.9
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.3e-19 100.5 726 27.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.3e-19 100.5 719 27.4
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 6.9e-19 100.1 713 26.8
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 9.1e-19 99.8 810 26.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-18 99.4 203 38.4
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 2.0e-18 98.6 655 26.3
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.0e-18 98.6 723 26.1
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.6e-18 98.2 765 26.4
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 4.5e-18 97.4 770 27.0
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.3e-17 95.9 302 35.1
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-17 95.5 678 25.7
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.9e-17 94.7 718 27.4
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 3.8e-17 94.4 718 28.3
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.5e-17 93.6 284 35.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 8.5e-17 93.2 780 27.2
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 8.5e-17 93.2 832 25.2
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.5e-16 91.7 722 27.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 4.2e-16 90.9 602 25.4
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.6e-15 87.8 680 28.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.9e-15 86.7 662 24.8
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.3e-14 85.1 226 35.8
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 3.0e-14 84.7 542 27.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.9e-14 84.3 755 26.1
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 6.7e-14 83.6 651 25.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.7e-13 80.5 771 25.4
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.7e-12 79.0 320 31.9
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.2e-12 78.6 400 28.2
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.8e-12 78.2 370 30.8
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.8e-12 78.2 669 25.1
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.7e-12 77.8 792 29.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.7e-12 77.8 82 59.8
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 4.8e-12 77.4 327 31.2
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 4.8e-12 77.4 692 24.4
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 8.2e-12 76.6 318 31.8
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.1e-11 76.3 639 23.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.4e-11 75.1 656 24.1
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.4e-11 75.1 190 36.3
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.4e-11 75.1 418 28.7
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 5.3e-11 73.9 814 24.8
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 5.3e-11 73.9 691 24.9
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.0e-09 69.7 117 37.6
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.3e-09 69.3 146 34.2
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.3e-09 69.3 557 26.0
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.2e-09 68.6 743 24.9
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 3.8e-09 67.8 196 33.7
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.5e-09 67.0 97 45.4
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.5e-09 67.0 325 32.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.4e-08 65.9 693 25.1
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.2e-08 64.7 737 25.1
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 5.5e-08 63.9 264 32.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.6e-07 62.4 248 33.5
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.1e-07 62.0 177 32.8
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 4.7e-07 60.8 723 25.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.8e-06 58.9 343 27.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.0e-06 58.2 448 25.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 3.9e-06 57.8 138 35.5
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 6.7e-06 57.0 342 30.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.7e-06 57.0 763 23.7


User provided reference genes

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