Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 2.5e-50 201.8 105 100.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.9e-13 79.3 85 52.9
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 9.5e-13 77.0 83 59.0
CDE11G0526 Ceratophyllum demersum HOM05D003381 ORTHO05D130251 6.1e-12 74.3 83 47.0
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 8.8e-11 70.5 83 45.8
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 8.8e-11 70.5 57 66.7
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.2e-10 70.1 57 66.7
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.5e-10 69.7 83 50.6
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.0e-10 69.3 65 64.6
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 2.0e-10 69.3 65 64.6
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.0e-10 69.3 80 52.5
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 3.4e-10 68.6 56 67.9
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.4e-10 68.6 66 57.6
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 4.4e-10 68.2 54 68.5
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 4.4e-10 68.2 58 67.2
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.7e-10 67.8 57 66.7
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 7.5e-10 67.4 57 66.7
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.8e-10 67.0 58 62.1
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.8e-10 67.0 58 62.1
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 9.8e-10 67.0 58 62.1
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.7e-09 66.2 73 53.4
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 1.7e-09 66.2 73 53.4
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.2e-09 65.9 55 65.5
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 2.2e-09 65.9 87 49.4
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.2e-09 65.9 83 53.0
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 2.8e-09 65.5 71 57.7
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.8e-09 65.5 58 60.3
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 2.8e-09 65.5 57 61.4
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 3.7e-09 65.1 63 57.1
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.7e-09 65.1 58 62.1
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 4.9e-09 64.7 58 67.2
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 6.3e-09 64.3 58 67.2
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 6.3e-09 64.3 58 67.2
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.1e-08 63.5 60 58.3
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.1e-08 63.5 65 60.0
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.4e-08 63.2 86 47.7
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.8e-08 62.8 58 58.6
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 1.8e-08 62.8 83 49.4
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.1e-08 62.0 58 58.6
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.1e-08 62.0 58 58.6
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 3.1e-08 62.0 67 56.7
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 4.1e-08 61.6 68 55.9
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 4.1e-08 61.6 58 60.3
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 4.1e-08 61.6 62 56.5
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 5.4e-08 61.2 58 58.6
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.4e-08 61.2 60 61.7
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 5.4e-08 61.2 58 58.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 5.4e-08 61.2 58 58.6
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 7.0e-08 60.8 67 58.2
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.0e-08 60.8 55 58.2
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.0e-08 60.8 58 60.3
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 7.0e-08 60.8 89 49.4
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 9.2e-08 60.5 56 58.9
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 9.2e-08 60.5 79 49.4
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 9.2e-08 60.5 73 53.4
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 9.2e-08 60.5 59 59.3
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.2e-07 60.1 70 51.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 1.6e-07 59.7 61 54.1
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 1.6e-07 59.7 52 63.5
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.6e-07 59.7 65 58.5
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.0e-07 59.3 67 55.2
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.7e-07 58.9 60 53.3
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.7e-07 58.9 58 56.9
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 2.7e-07 58.9 59 57.6
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.7e-07 58.9 59 57.6
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 3.5e-07 58.5 83 42.2
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 3.5e-07 58.5 55 61.8
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.5e-07 58.5 67 55.2
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.5e-07 58.5 67 55.2
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.5e-07 58.2 55 63.6
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 4.5e-07 58.2 58 56.9
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 4.5e-07 58.2 61 54.1
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 4.5e-07 58.2 72 47.2
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 4.5e-07 58.2 64 54.7
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 5.9e-07 57.8 58 55.2
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 7.7e-07 57.4 58 56.9
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 7.7e-07 57.4 58 56.9
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 7.7e-07 57.4 66 53.0
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 7.7e-07 57.4 57 56.1
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 7.7e-07 57.4 55 58.2
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.0e-06 57.0 58 56.9
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.0e-06 57.0 70 50.0
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.0e-06 57.0 58 56.9
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-06 56.6 57 59.6
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.3e-06 56.6 55 58.2
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.3e-06 56.6 55 58.2
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-06 56.2 55 54.5
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.7e-06 56.2 58 56.9
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.7e-06 56.2 67 55.2
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.3e-06 55.8 55 54.5
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.3e-06 55.8 60 50.0
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 2.3e-06 55.8 63 47.6
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.8e-06 55.1 55 58.2
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 5.0e-06 54.7 58 58.6
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 6.6e-06 54.3 60 51.7


User provided reference genes

Program Settings