Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 0.0e+00 1139.0 558 100.0
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 6.4e-217 757.7 490 71.2
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 1.1e-216 756.9 483 72.5
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 1.9e-216 756.1 505 69.1
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 5.1e-214 748.0 484 69.6
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 1.5e-213 746.5 503 67.0
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 1.9e-213 746.1 500 69.4
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 9.5e-213 743.8 480 69.8
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 1.1e-211 740.3 499 69.3
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.8e-211 739.6 495 67.9
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 2.4e-211 739.2 457 71.3
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 4.0e-211 738.4 479 69.9
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 6.8e-211 737.6 466 71.0
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 8.9e-211 737.3 481 70.3
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 2.0e-210 736.1 443 72.9
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 5.8e-210 734.6 480 69.6
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 2.2e-209 732.6 459 71.0
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 4.9e-209 731.5 447 73.2
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 4.9e-209 731.5 485 68.7
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 2.4e-208 729.2 447 73.2
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.2e-207 726.9 484 69.6
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.6e-207 726.5 497 67.6
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 1.6e-207 726.5 515 65.4
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 3.5e-207 725.3 485 69.3
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 3.5e-207 725.3 553 62.2
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 3.9e-206 721.8 481 68.6
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 5.1e-206 721.5 484 68.8
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 1.1e-205 720.3 510 66.5
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 2.5e-205 719.2 518 65.4
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 3.3e-205 718.8 510 65.9
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 4.3e-205 718.4 482 68.0
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 7.3e-205 717.6 446 71.5
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 2.8e-204 715.7 511 66.1
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 1.4e-203 713.4 497 67.8
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 1.4e-203 713.4 479 68.1
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 1.8e-203 713.0 506 65.6
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.8e-203 713.0 494 67.8
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 9.0e-203 710.7 506 66.0
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 1.2e-202 710.3 521 63.5
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 1.2e-202 710.3 454 70.3
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 1.5e-202 709.9 469 69.3
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 3.4e-202 708.8 493 65.9
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 5.8e-202 708.0 478 68.6
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 1.3e-201 706.8 572 60.8
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 1.3e-201 706.8 572 60.8
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 2.2e-201 706.1 489 67.3
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 2.9e-201 705.7 510 66.1
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 8.4e-201 704.1 505 65.3
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 2.4e-200 702.6 493 65.5
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.6e-199 699.9 487 65.3
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 2.7e-199 699.1 509 64.4
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 3.5e-199 698.7 502 64.7
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 6.0e-199 698.0 486 65.8
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 6.0e-199 698.0 445 69.4
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 7.8e-199 697.6 492 66.5
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 1.0e-198 697.2 479 66.2
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 6.6e-198 694.5 499 65.3
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 4.3e-197 691.8 498 64.3
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 5.6e-197 691.4 461 66.6
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 1.3e-196 690.3 427 71.7
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 2.4e-195 686.0 488 65.0
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 5.8e-194 681.4 490 65.3
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 4.9e-193 678.3 538 61.3
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 8.4e-193 677.6 541 59.7
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 4.2e-192 675.2 559 59.2
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 2.1e-191 672.9 409 72.9
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.0e-190 670.6 431 68.9
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 8.7e-190 667.5 481 64.7
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 1.1e-189 667.2 419 69.7
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 2.8e-188 662.5 542 60.5
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 2.6e-186 656.0 445 67.9
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.9e-184 649.8 586 55.6
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 1.6e-183 646.7 502 59.6
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 2.1e-183 646.4 505 62.0
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 6.0e-183 644.8 482 63.1
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 7.9e-183 644.4 510 60.8
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.0e-182 644.0 503 60.4
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 4.3e-181 638.6 495 60.4
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 2.8e-180 636.0 503 60.2
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 3.7e-180 635.6 443 63.9
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 5.5e-176 621.7 479 60.1
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 8.7e-174 614.4 554 55.2
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 5.7e-173 611.7 453 62.3
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 1.6e-172 610.1 433 62.6
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 2.2e-172 609.8 442 61.3
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 2.2e-172 609.8 509 56.8
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 2.8e-172 609.4 433 62.4
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 6.3e-172 608.2 434 62.2
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 6.3e-172 608.2 434 62.2
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 1.1e-171 607.4 485 57.1
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 4.1e-171 605.5 442 60.9
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 5.3e-171 605.1 453 61.4
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 1.3e-169 600.5 453 61.1
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 2.3e-166 589.7 494 55.7
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 7.4e-165 584.7 448 59.2
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 3.4e-162 575.9 443 60.3
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.6e-159 567.0 437 58.6
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 2.1e-151 540.0 473 52.9
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 2.7e-151 539.7 478 56.1
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.0e-150 537.7 369 68.0
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.4e-147 527.3 488 55.9
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 2.4e-131 473.4 532 48.1
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.5e-98 363.2 252 69.8
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 4.3e-64 250.0 161 65.2
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 3.0e-57 227.3 464 31.5
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 6.5e-52 209.5 142 64.1
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 2.7e-50 204.1 287 40.8
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.0e-45 188.0 123 72.4
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.1e-38 165.6 117 59.0
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 2.4e-38 164.5 259 40.9
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 4.4e-32 143.7 136 58.1
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 4.8e-31 140.2 93 64.5
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 1.6e-29 135.2 120 59.2
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 2.7e-29 134.4 148 52.0
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 1.0e-28 132.5 148 51.4
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 8.3e-23 112.8 93 53.8
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.4e-22 112.1 61 83.6
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 1.4e-22 112.1 192 41.1
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 5.5e-19 100.1 332 26.5
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 2.1e-18 98.2 338 25.7
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.5e-16 92.0 335 22.7
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.5e-16 92.0 342 24.6
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 2.0e-16 91.7 336 25.3
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 5.7e-16 90.1 328 25.3
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 7.5e-16 89.7 329 25.2
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 9.8e-16 89.4 324 25.3
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 3.7e-15 87.4 341 24.0
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 3.7e-15 87.4 341 24.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 4.9e-15 87.0 329 24.6
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 4.9e-15 87.0 327 24.8
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 6.3e-15 86.7 248 27.0
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 6.3e-15 86.7 336 23.8
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 6.3e-15 86.7 335 24.5
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.1e-14 85.9 341 23.8
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.4e-14 85.5 334 24.9
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 9.2e-14 82.8 214 26.6
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 9.2e-14 82.8 331 24.5
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.2e-13 82.4 319 25.1
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.6e-13 82.0 339 23.9
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 2.0e-13 81.6 355 23.4
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 2.7e-13 81.3 335 24.8
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 4.5e-13 80.5 265 25.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.8e-12 77.4 354 24.0
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.1e-11 75.9 329 24.9
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 1.5e-11 75.5 222 28.8
Cfa025051 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.5e-11 75.5 327 24.2
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.9e-11 75.1 307 23.8
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.3e-11 74.3 327 24.2
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 5.6e-11 73.6 215 24.7
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.8e-10 71.2 337 20.8
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.8e-10 71.2 215 25.6
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.8e-10 71.2 343 22.7
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 3.6e-10 70.9 177 28.2
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 6.1e-10 70.1 258 24.4
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 6.8e-09 66.6 67 53.7
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 6.8e-09 66.6 337 20.2
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 2.0e-08 65.1 45 60.0
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 2.6e-08 64.7 131 29.8
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 3.7e-07 60.8 180 26.1
Pp3c10_15710 Physcomitrium patens HOM05D000645 ORTHO05D000494 4.9e-07 60.5 246 24.0
COL.COLO4_29103 Corchorus olitorius HOM05D004386 ORTHO05D005247 8.3e-07 59.7 262 23.3
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 3.2e-06 57.8 61 47.5


User provided reference genes

Program Settings