Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.0e-40 168.7 87 100.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 4.3e-27 124.4 79 81.0
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 5.6e-27 124.0 80 77.5
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 5.6e-27 124.0 75 84.0
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 9.5e-27 123.2 79 81.0
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 9.5e-27 123.2 79 81.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 9.5e-27 123.2 79 81.0
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-26 122.9 79 79.7
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.2e-26 122.9 80 76.2
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.6e-26 122.5 83 75.9
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.1e-26 122.1 79 78.5
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.8e-26 121.7 77 79.2
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.6e-26 121.3 76 81.6
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.6e-26 121.3 83 74.7
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 3.6e-26 121.3 77 77.9
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 4.7e-26 120.9 80 76.2
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 4.7e-26 120.9 77 77.9
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 6.2e-26 120.6 77 79.2
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 6.2e-26 120.6 80 77.5
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 8.1e-26 120.2 75 81.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.1e-25 119.8 75 81.3
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.1e-25 119.8 75 81.3
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.1e-25 119.8 75 82.7
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-25 119.4 79 78.5
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.8e-25 119.0 76 80.3
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.8e-25 119.0 78 78.2
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 3.1e-25 118.2 80 76.2
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 3.1e-25 118.2 80 76.2
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.1e-25 118.2 80 75.0
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 5.2e-25 117.5 75 78.7
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 5.2e-25 117.5 80 76.2
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 5.2e-25 117.5 80 76.2
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 6.8e-25 117.1 72 83.3
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 6.8e-25 117.1 75 77.3
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 6.8e-25 117.1 85 74.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 8.9e-25 116.7 78 76.9
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 8.9e-25 116.7 78 75.6
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.9e-25 116.7 76 77.6
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.5e-24 115.9 78 76.9
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.5e-24 115.9 80 75.0
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.0e-24 115.5 82 75.6
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 2.0e-24 115.5 76 76.3
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 2.0e-24 115.5 79 74.7
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 2.6e-24 115.2 76 78.9
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.6e-24 115.2 72 81.9
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.6e-24 115.2 72 81.9
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.6e-24 115.2 76 76.3
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 3.4e-24 114.8 76 78.9
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 3.4e-24 114.8 69 82.6
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 3.4e-24 114.8 69 82.6
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 3.4e-24 114.8 69 82.6
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.4e-24 114.8 76 76.3
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 4.4e-24 114.4 66 86.4
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 4.4e-24 114.4 66 86.4
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 4.4e-24 114.4 76 76.3
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 4.4e-24 114.4 76 76.3
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 4.4e-24 114.4 78 78.2
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.8e-24 114.0 82 74.4
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 5.8e-24 114.0 69 81.2
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 5.8e-24 114.0 79 74.7
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 5.8e-24 114.0 80 73.8
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 5.8e-24 114.0 76 76.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 7.5e-24 113.6 66 86.4
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 7.5e-24 113.6 66 86.4
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 7.5e-24 113.6 66 86.4
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 7.5e-24 113.6 66 86.4
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.5e-24 113.6 76 76.3
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 9.9e-24 113.2 66 84.8
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.3e-23 112.8 69 81.2
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.3e-23 112.8 69 81.2
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.3e-23 112.8 86 70.9
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.3e-23 112.8 76 77.6
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.3e-23 112.8 76 76.3
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.7e-23 112.5 80 75.0
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.7e-23 112.5 80 75.0
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.9e-23 111.7 76 77.6
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.9e-23 111.7 75 77.3
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 2.9e-23 111.7 76 77.6
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 2.9e-23 111.7 76 77.6
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 3.7e-23 111.3 79 77.2
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 3.7e-23 111.3 85 70.6
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 3.7e-23 111.3 69 82.6
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.9e-23 110.9 76 75.0
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 6.4e-23 110.5 82 73.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 6.4e-23 110.5 74 77.0
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 6.4e-23 110.5 76 76.3
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 6.4e-23 110.5 80 71.2
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 8.3e-23 110.2 79 73.4
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 8.3e-23 110.2 81 70.4
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 8.3e-23 110.2 76 75.0
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.1e-22 109.8 66 86.4
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.1e-22 109.8 79 72.2
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.1e-22 109.8 80 75.0
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.4e-22 109.4 82 73.2
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.4e-22 109.4 71 78.9
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.9e-22 109.0 66 83.3
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.4e-22 108.6 76 75.0
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.4e-22 108.6 73 78.1
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.4e-22 108.6 80 72.5
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 3.2e-22 108.2 72 76.4
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 4.1e-22 107.8 71 78.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 4.1e-22 107.8 71 78.9
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 5.4e-22 107.5 75 73.3
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 7.1e-22 107.1 72 75.0
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 7.1e-22 107.1 72 76.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 7.1e-22 107.1 71 78.9
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 7.1e-22 107.1 71 78.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 7.1e-22 107.1 86 69.8
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 9.2e-22 106.7 75 73.3
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.6e-21 105.9 73 75.3
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 2.1e-21 105.5 76 75.0
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.7e-21 105.1 80 68.8
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 3.5e-21 104.8 71 76.1
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 3.5e-21 104.8 72 76.4
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 6.0e-21 104.0 75 72.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 7.8e-21 103.6 77 70.1
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.0e-20 103.2 71 76.1
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.0e-20 103.2 65 80.0
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 6.6e-20 100.5 73 74.0
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 8.6e-20 100.1 64 81.2
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.8e-17 92.4 76 65.8
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 8.9e-17 90.1 69 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.9e-15 84.3 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.9e-15 84.3 66 68.2
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 8.4e-15 83.6 93 55.9
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 3.2e-14 81.6 83 55.4
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 4.2e-14 81.3 81 59.3
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 4.6e-13 77.8 145 39.3
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 6.6e-12 73.9 71 56.3
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 7.3e-11 70.5 69 58.0
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 8.1e-10 67.0 70 55.7
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.8e-09 65.9 45 73.3
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.8e-09 65.9 45 73.3
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.8e-09 65.9 45 73.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 7.6e-08 60.5 86 37.2
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 8.4e-07 57.0 63 52.4
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 4.2e-06 54.7 30 86.7


User provided reference genes

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