Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0331 Ceratophyllum demersum HOM05D002758 ORTHO05D002885 1.6e-59 232.6 124 100.0
CDE06G2355 Ceratophyllum demersum HOM05D001011 ORTHO05D000851 5.9e-38 161.0 95 89.5
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 8.3e-16 87.4 133 47.4
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 3.1e-15 85.5 133 47.4
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 2.0e-14 82.8 130 46.2
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 1.3e-13 80.1 144 42.4
MBI04_g24597_MAGBIO Magnolia biondii HOM05D002758 ORTHO05D002885 2.9e-13 79.0 115 43.5
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 6.5e-13 77.8 126 46.0
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 3.2e-12 75.5 136 42.6
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 5.5e-12 74.7 131 39.7
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 5.5e-12 74.7 131 42.7
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 5.5e-12 74.7 133 40.6
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 7.2e-12 74.3 135 41.5
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 9.4e-12 73.9 127 41.7
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 1.6e-11 73.2 149 38.3
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.1e-11 72.8 138 43.5
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 2.1e-11 72.8 125 43.2
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 2.7e-11 72.4 136 40.4
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.7e-11 72.4 124 40.3
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.7e-11 72.4 129 41.1
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 2.7e-11 72.4 125 42.4
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 2.7e-11 72.4 109 45.9
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 3.6e-11 72.0 134 41.8
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 4.7e-11 71.6 135 40.7
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 4.7e-11 71.6 125 44.0
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 4.7e-11 71.6 131 38.9
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.1e-11 71.2 124 41.1
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.1e-11 71.2 136 40.4
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 6.1e-11 71.2 125 43.2
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 8.0e-11 70.9 123 44.7
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.0e-11 70.9 124 40.3
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 8.0e-11 70.9 135 40.7
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 1.0e-10 70.5 129 41.9
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 1.0e-10 70.5 138 42.0
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 1.4e-10 70.1 127 41.7
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.4e-10 70.1 130 43.1
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.4e-10 70.1 130 43.1
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 1.8e-10 69.7 129 42.6
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 1.8e-10 69.7 146 39.7
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 1.8e-10 69.7 127 41.7
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 2.3e-10 69.3 124 40.3
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.3e-10 69.3 138 39.9
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.3e-10 69.3 138 39.9
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.3e-10 69.3 138 39.9
DCAR_014886 Daucus carota HOM05D002758 ORTHO05D002885 3.0e-10 68.9 127 40.2
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 3.0e-10 68.9 136 39.7
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 4.0e-10 68.6 137 39.4
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.0e-10 68.6 130 42.3
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 4.0e-10 68.6 133 45.9
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 5.2e-10 68.2 130 42.3
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 5.2e-10 68.2 156 40.4
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 6.8e-10 67.8 130 40.8
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 6.8e-10 67.8 123 38.2
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 6.8e-10 67.8 132 40.9
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 8.8e-10 67.4 132 42.4
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.8e-10 67.4 140 38.6
PSO210G5441 Papaver somniferum HOM05D002758 ORTHO05D002885 8.8e-10 67.4 124 39.5
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 8.8e-10 67.4 152 36.2
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 1.2e-09 67.0 126 40.5
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 1.2e-09 67.0 126 42.1
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.5e-09 66.6 133 40.6
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 1.5e-09 66.6 146 37.0
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 1.5e-09 66.6 139 40.3
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 1.5e-09 66.6 146 40.4
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 1.5e-09 66.6 128 41.4
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 1.5e-09 66.6 140 39.3
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.5e-09 66.6 130 40.0
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.0e-09 66.2 130 42.3
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.0e-09 66.2 127 41.7
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 2.0e-09 66.2 138 37.7
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.6e-09 65.9 124 41.1
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.6e-09 65.9 140 41.4
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.6e-09 65.9 130 42.3
HanXRQChr04g0096561 Helianthus annuus HOM05D002758 ORTHO05D002885 2.6e-09 65.9 133 40.6
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 2.6e-09 65.9 133 38.3
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 3.4e-09 65.5 125 40.8
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 3.4e-09 65.5 133 39.1
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.4e-09 65.5 140 41.4
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 3.4e-09 65.5 128 36.7
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 3.4e-09 65.5 134 38.1
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 4.4e-09 65.1 133 38.3
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 4.4e-09 65.1 143 39.9
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 5.7e-09 64.7 145 41.4
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 5.7e-09 64.7 141 41.1
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 5.7e-09 64.7 121 43.0
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 7.5e-09 64.3 134 41.0
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 7.5e-09 64.3 136 38.2
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 7.5e-09 64.3 137 38.7
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 9.8e-09 63.9 138 37.7
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.3e-08 63.5 137 39.4
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 1.3e-08 63.5 130 39.2
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.3e-08 63.5 131 37.4
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.3e-08 63.5 136 39.0
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 1.7e-08 63.2 136 38.2
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 1.7e-08 63.2 120 41.7
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.7e-08 63.2 136 40.4
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 2.2e-08 62.8 137 39.4
PSO210G3002 Papaver somniferum HOM05D002758 ORTHO05D002885 2.8e-08 62.4 129 37.2
Solyc07g008280.4 Solanum lycopersicum HOM05D002758 ORTHO05D002885 2.8e-08 62.4 143 35.0
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 3.7e-08 62.0 141 37.6
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 3.7e-08 62.0 128 38.3
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 3.7e-08 62.0 135 39.3
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 3.7e-08 62.0 132 38.6
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.7e-08 62.0 143 35.7
QL02p088621 Quercus lobata HOM05D002758 ORTHO05D002885 3.7e-08 62.0 138 37.0
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 3.7e-08 62.0 123 39.8
Hund06567 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.7e-08 62.0 137 37.2
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 3.7e-08 62.0 134 38.8
Eucgr.C01181 Eucalyptus grandis HOM05D002758 ORTHO05D002885 4.9e-08 61.6 133 37.6
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 4.9e-08 61.6 130 40.0
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 6.3e-08 61.2 138 39.9
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 6.3e-08 61.2 142 40.1
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 8.3e-08 60.8 133 38.3
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 1.1e-07 60.5 132 36.4
PSO170G3914 Papaver somniferum HOM05D002758 ORTHO05D002885 1.1e-07 60.5 127 36.2
Aqoxy7G02215 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 1.4e-07 60.1 129 35.7
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 1.4e-07 60.1 133 38.3
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 1.4e-07 60.1 127 37.8
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 1.4e-07 60.1 129 42.6
Sopen07g004170 Solanum pennellii HOM05D002758 ORTHO05D002885 1.4e-07 60.1 140 35.7
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 1.8e-07 59.7 135 37.0
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 1.8e-07 59.7 121 39.7
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 1.8e-07 59.7 140 38.6
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 2.4e-07 59.3 138 41.3
arahy.Tifrunner.gnm1.ann1.FSE12S Arachis hypogaea HOM05D002758 ORTHO05D002885 4.1e-07 58.5 128 38.3
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 4.1e-07 58.5 136 36.8
PSO063G4123 Papaver somniferum HOM05D002758 ORTHO05D002885 4.1e-07 58.5 128 35.9
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 5.4e-07 58.2 139 32.4
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 7.0e-07 57.8 134 38.8
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 7.0e-07 57.8 146 39.0
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 7.0e-07 57.8 126 36.5
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 1.2e-06 57.0 131 37.4
HanXRQChr05g0138371 Helianthus annuus HOM05D002758 ORTHO05D002885 1.2e-06 57.0 136 35.3
HanXRQChr05g0140201 Helianthus annuus HOM05D002758 ORTHO05D002885 1.2e-06 57.0 136 35.3
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 1.2e-06 57.0 135 35.6
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.6e-06 56.6 134 39.6
Oeu045136.1 Olea europaea HOM05D002758 ORTHO05D002885 1.6e-06 56.6 124 33.1
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.6e-06 56.6 141 36.2
HanXRQChr09g0241961 Helianthus annuus HOM05D002758 ORTHO05D002885 2.0e-06 56.2 132 35.6
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 2.0e-06 56.2 132 40.9
Psat7g255440 Pisum sativum HOM05D002758 ORTHO05D002885 2.0e-06 56.2 128 37.5
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.7e-06 55.8 137 40.9
Hma1.2p1_1962F.1_g309240 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.7e-06 55.8 124 36.3
Hma1.2p1_3201F.1_g333909 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.7e-06 55.8 124 36.3
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.5e-06 55.5 131 38.2
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.5e-06 55.5 133 38.3
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 3.5e-06 55.5 128 37.5
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 4.5e-06 55.1 133 37.6
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 4.5e-06 55.1 134 33.6
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 4.5e-06 55.1 127 39.4
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 4.5e-06 55.1 125 37.6
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 4.5e-06 55.1 134 38.1
arahy.Tifrunner.gnm1.ann1.66WDLV Arachis hypogaea HOM05D002758 ORTHO05D002885 5.9e-06 54.7 124 37.9
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 5.9e-06 54.7 130 38.5
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 5.9e-06 54.7 133 37.6


User provided reference genes

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