Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.3e-194 682.9 352 100.0
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 5.7e-171 604.4 457 74.0
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.2e-139 500.4 458 60.3
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.6e-133 479.9 456 57.9
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 8.1e-133 477.6 457 58.4
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.8e-132 476.5 457 58.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.3e-132 476.1 457 58.0
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.6e-131 472.6 459 57.7
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.5e-131 471.1 456 57.5
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.7e-130 469.9 437 57.7
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.7e-130 468.8 449 58.4
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.4e-129 466.1 395 61.5
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 3.2e-129 465.7 445 57.8
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 7.1e-129 464.5 457 56.2
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 9.2e-129 464.2 395 61.3
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.6e-128 463.4 460 57.2
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 2.1e-128 463.0 395 61.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 6.0e-128 461.5 445 56.4
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 7.8e-128 461.1 448 56.2
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 7.8e-128 461.1 457 56.7
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.3e-127 460.3 395 60.8
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 2.3e-127 459.5 456 55.3
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 3.0e-127 459.1 390 62.8
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 3.9e-127 458.8 445 56.4
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.9e-126 456.4 457 56.0
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.9e-126 456.4 461 54.9
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 7.3e-126 454.5 429 56.9
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.2e-125 453.8 458 56.1
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.2e-125 453.8 456 55.7
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.6e-125 453.4 457 55.8
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.6e-125 453.4 394 60.4
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 1.6e-125 453.4 461 54.7
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 2.1e-125 453.0 456 55.5
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 4.7e-125 451.8 441 55.1
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.2e-125 451.4 456 55.3
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.2e-125 451.4 456 55.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 8.1e-125 451.1 395 59.7
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.3e-124 449.5 394 59.4
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 3.1e-124 449.1 457 54.0
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 3.1e-124 449.1 394 59.4
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.1e-124 449.1 440 55.5
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 3.1e-124 449.1 457 54.9
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 3.1e-124 449.1 394 59.9
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 4.0e-124 448.7 457 55.6
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.2e-124 448.4 451 56.8
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.2e-124 448.4 394 60.2
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.9e-124 447.6 394 60.2
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.5e-123 446.8 459 55.1
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.5e-123 446.8 457 55.1
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.5e-123 446.8 390 59.7
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.0e-123 446.4 391 59.6
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.0e-123 446.4 450 55.3
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 2.0e-123 446.4 394 59.1
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.4e-123 445.7 392 59.7
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 3.4e-123 445.7 458 55.5
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 4.4e-123 445.3 395 59.5
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.6e-123 444.5 454 54.8
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.6e-123 444.5 454 54.8
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 9.9e-123 444.1 396 58.8
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.9e-122 441.8 391 59.3
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 8.4e-122 441.0 394 59.9
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 8.4e-122 441.0 457 54.7
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.1e-121 440.7 394 60.4
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 1.4e-121 440.3 394 60.2
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.4e-121 439.5 394 60.2
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 5.4e-121 438.3 395 58.7
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 7.1e-121 438.0 394 60.2
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 7.1e-121 438.0 394 59.9
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 9.2e-121 437.6 460 55.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.6e-120 436.8 394 59.9
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 2.1e-120 436.4 394 59.6
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 2.1e-120 436.4 394 59.6
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 2.7e-120 436.0 394 59.6
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 3.5e-120 435.6 358 63.7
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.5e-120 435.6 379 60.4
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 6.0e-120 434.9 392 58.9
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 3.9e-119 432.2 394 59.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 5.1e-119 431.8 394 59.6
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.1e-118 430.6 463 52.9
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.5e-118 430.3 393 59.3
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.5e-118 430.3 393 59.3
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.9e-118 429.9 454 54.2
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.3e-118 429.1 439 53.3
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 7.3e-118 427.9 395 58.5
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 9.6e-118 427.6 400 57.5
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.1e-117 426.4 440 53.6
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 2.1e-117 426.4 402 57.5
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.7e-117 425.2 454 52.0
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 4.7e-117 425.2 443 53.0
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 4.7e-117 425.2 395 57.5
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 1.4e-116 423.7 395 59.0
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.8e-116 423.3 368 59.5
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 5.2e-116 421.8 427 54.3
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.2e-115 420.6 419 55.6
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.5e-115 420.2 396 58.6
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 5.8e-115 418.3 395 57.7
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 5.8e-115 418.3 395 57.7
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 9.9e-115 417.5 394 57.1
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 8.4e-114 414.5 457 53.4
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.4e-113 413.7 457 51.4
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.4e-113 413.7 454 50.9
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.4e-113 413.7 374 56.7
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.4e-113 413.7 374 56.7
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 4.2e-113 412.1 394 56.3
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 2.7e-112 409.5 395 55.9
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.3e-111 407.1 448 51.3
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-111 406.8 374 56.1
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 6.6e-111 404.8 391 55.8
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 8.7e-111 404.4 434 53.7
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 2.5e-110 402.9 378 55.8
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.3e-110 402.5 448 51.1
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 7.3e-110 401.4 514 45.7
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.1e-108 397.5 413 54.5
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.5e-107 393.7 332 62.3
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.5e-107 393.7 389 53.0
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.3e-106 390.6 379 54.9
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 4.6e-104 382.1 435 49.9
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 6.2e-101 371.7 370 54.6
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.6e-99 364.8 350 56.9
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.5e-94 350.5 387 49.4
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.8e-93 346.3 439 46.9
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.8e-93 346.3 379 50.9
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.4e-91 339.3 406 49.8
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.7e-88 329.7 378 49.2
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 8.7e-87 324.7 385 46.8
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.5e-86 323.9 310 57.4
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.5e-86 323.2 362 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 9.6e-86 321.2 389 47.0
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.8e-85 319.7 379 48.0
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.1e-84 316.2 455 45.1
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 5.3e-84 315.5 347 49.3
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.9e-75 285.4 309 51.1
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.9e-74 283.1 352 46.9
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 3.1e-68 263.1 272 54.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.5e-67 260.8 248 55.6
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 3.8e-66 256.1 182 69.2
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 3.2e-65 253.1 180 68.9
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.5e-62 244.2 361 42.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 5.3e-60 235.7 156 71.2
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.0e-59 233.8 307 47.6
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 2.3e-55 220.3 178 61.8
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 6.1e-48 195.7 145 67.6
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 5.7e-46 189.1 160 60.6
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.9e-42 176.8 191 53.9
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.2e-37 160.6 92 80.4
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.5e-30 137.9 124 56.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 3.2e-28 130.2 123 56.9
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.5e-22 111.3 60 90.0


User provided reference genes

Program Settings