Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 0.0e+00 1603.2 855 100.0
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.7e-198 696.4 872 51.1
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 6.0e-198 695.3 788 53.7
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 2.0e-193 680.2 860 50.7
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.7e-190 669.8 798 52.3
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 2.4e-186 656.8 868 48.3
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.3e-184 651.0 882 49.1
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 9.3e-183 644.8 759 51.4
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 6.0e-182 642.1 860 48.4
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.2e-177 627.9 759 51.0
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 9.3e-175 618.2 780 50.6
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 7.8e-174 615.1 844 47.7
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 2.1e-171 607.1 827 48.5
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 3.6e-171 606.3 919 45.5
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.0e-170 602.8 810 48.9
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 9.0e-170 601.7 888 44.6
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.7e-168 597.4 897 44.9
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 2.2e-168 597.0 710 51.8
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 4.9e-168 595.9 872 46.2
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-166 591.3 867 45.9
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.7e-166 590.1 931 44.4
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.3e-165 587.8 861 45.2
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 2.3e-165 587.0 768 48.2
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 3.0e-165 586.6 770 49.2
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 6.7e-165 585.5 720 50.3
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 2.5e-164 583.6 791 47.9
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.5e-164 583.6 775 48.3
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 5.6e-164 582.4 856 46.5
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.2e-161 574.7 778 47.6
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.4e-161 573.2 830 47.0
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 5.8e-161 572.4 783 47.6
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 7.6e-161 572.0 846 45.9
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.3e-160 571.2 897 43.5
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.3e-160 571.2 767 49.0
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 3.8e-160 569.7 866 45.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 3.8e-160 569.7 814 46.2
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 3.8e-160 569.7 873 44.7
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 6.5e-160 568.9 815 46.7
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.1e-159 568.2 702 52.0
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.4e-159 567.8 814 46.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.4e-159 567.8 878 44.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 3.2e-159 566.6 826 46.0
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.2e-159 566.2 814 46.1
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.5e-159 565.8 820 45.2
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 7.1e-159 565.5 811 46.2
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 2.1e-158 563.9 786 47.8
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.3e-157 561.2 853 44.5
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.1e-156 558.1 835 46.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 2.5e-156 557.0 847 46.0
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 2.5e-156 557.0 847 46.0
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 3.7e-155 553.1 779 46.0
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.4e-154 551.2 945 41.4
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 3.4e-153 546.6 816 45.6
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 7.6e-153 545.4 776 46.6
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.7e-152 544.3 850 44.5
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.7e-152 544.3 845 44.6
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-152 543.5 775 46.6
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 6.5e-152 542.3 799 44.7
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.4e-151 541.2 896 43.5
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 3.2e-151 540.0 827 44.6
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.6e-150 537.7 874 43.4
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.3e-149 534.6 837 43.7
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 1.8e-149 534.3 852 43.3
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 3.0e-149 533.5 747 46.9
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.1e-148 531.6 771 45.7
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 2.5e-148 530.4 847 43.0
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.6e-147 527.7 887 43.3
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-147 527.3 866 43.1
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.2e-147 525.4 870 43.1
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.4e-146 524.6 777 44.7
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 4.1e-146 523.1 791 44.1
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 5.3e-146 522.7 749 46.5
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.2e-145 521.5 882 42.1
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 4.5e-145 519.6 816 43.5
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.2e-144 517.3 878 42.1
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 6.5e-144 515.8 861 42.9
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.2e-142 511.5 886 41.2
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 7.9e-142 508.8 726 45.5
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 5.1e-141 506.1 880 42.3
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.0e-140 504.2 738 45.4
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 8.2e-139 498.8 851 42.0
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.1e-138 498.4 875 40.8
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 5.9e-137 492.7 851 41.6
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 7.7e-137 492.3 889 40.3
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 1.7e-136 491.1 777 44.5
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 8.5e-136 488.8 858 41.0
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 4.2e-135 486.5 745 47.0
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.2e-134 485.0 753 43.8
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.6e-134 484.6 612 52.1
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.1e-134 484.2 914 39.8
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 2.7e-134 483.8 818 42.2
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-133 481.1 801 44.1
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 2.3e-133 480.7 837 41.6
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 3.0e-133 480.3 847 41.1
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 3.9e-133 479.9 847 41.0
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.1e-133 479.6 865 41.4
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.5e-132 478.0 837 41.5
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 3.3e-132 476.9 845 40.8
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 3.1e-130 470.3 882 39.9
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 4.1e-130 469.9 731 44.6
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 4.5e-129 466.5 911 38.6
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 4.5e-129 466.5 875 42.1
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 5.9e-129 466.1 785 40.6
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 8.5e-128 462.2 666 45.3
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 7.4e-124 449.1 850 40.2
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.2e-123 447.6 470 54.5
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 1.7e-120 438.0 614 47.1
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 8.5e-120 435.6 852 38.5
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.8e-117 427.9 860 37.7
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 1.8e-114 417.9 600 49.2
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 6.5e-112 409.5 514 46.7
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.2e-111 406.8 855 36.8
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 1.7e-104 384.8 868 36.1
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 8.6e-88 329.3 906 33.3
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 5.6e-87 326.6 622 38.6
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.5e-84 318.5 810 32.8
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 9.2e-82 309.3 593 38.1
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 4.6e-81 307.0 439 43.7
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-68 263.5 406 46.3
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-65 253.4 408 42.9
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.9e-63 248.4 542 35.1
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.5e-57 227.6 241 50.6
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.2e-51 208.4 536 35.4
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.3e-46 192.6 182 53.3
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 8.7e-40 169.9 381 36.5
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 4.3e-39 167.5 213 47.9
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 6.3e-38 163.7 438 38.4
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 6.3e-38 163.7 891 25.1
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 3.4e-36 157.9 626 25.7
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 3.5e-33 147.9 158 53.8
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 6.1e-33 147.1 305 39.7
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.0e-32 146.4 167 48.5
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.3e-32 145.2 162 46.9
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.5e-31 141.7 237 37.6
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 5.7e-31 140.6 340 37.9
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.0e-28 132.1 169 53.3
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-27 129.4 142 52.8
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 5.5e-26 124.0 307 37.5
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.4e-21 108.6 97 53.6
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.4e-21 108.6 97 53.6
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.7e-19 102.4 100 51.0
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-16 91.7 194 38.7
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.7e-15 86.7 356 30.1
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.6e-12 78.6 241 36.9
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-10 73.2 254 31.1
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.5e-10 72.8 304 28.3
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.9e-10 72.4 109 40.4
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 7.2e-10 70.5 68 60.3
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 9.4e-10 70.1 253 30.4
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.2e-08 64.3 45 73.3
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 6.7e-08 63.9 177 32.2
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-06 59.3 96 39.6
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 8.2e-06 57.0 56 53.6
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 8.2e-06 57.0 56 53.6
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 8.2e-06 57.0 37 70.3


User provided reference genes

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