Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.2e-116 423.3 225 100.0
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 5.6e-87 324.7 195 85.6
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 3.6e-86 322.0 195 85.1
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 3.6e-86 322.0 195 85.1
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 8.1e-86 320.9 198 84.3
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.3e-85 319.3 195 84.1
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 3.1e-85 318.9 195 85.1
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 5.2e-85 318.2 200 82.5
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 5.2e-85 318.2 198 83.3
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 6.8e-85 317.8 195 85.1
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 6.8e-85 317.8 195 83.6
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 6.8e-85 317.8 198 82.8
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.2e-84 317.0 195 83.1
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 2.6e-84 315.8 217 76.0
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 2.6e-84 315.8 198 84.8
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 4.4e-84 315.1 195 84.1
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.8e-84 314.7 200 82.0
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 5.8e-84 314.7 195 84.1
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 9.8e-84 313.9 195 83.1
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 9.8e-84 313.9 194 84.0
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 1.3e-83 313.5 198 82.8
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 1.3e-83 313.5 198 84.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 1.7e-83 313.2 195 82.6
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.7e-83 313.2 198 82.3
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.7e-83 313.2 198 81.3
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.2e-83 312.8 195 82.1
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.2e-83 312.8 195 82.1
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.2e-83 312.8 195 83.6
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.2e-83 312.8 195 83.1
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.9e-83 312.4 195 82.6
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.7e-83 312.0 198 81.8
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.7e-83 312.0 198 81.8
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.7e-83 312.0 198 81.8
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 4.9e-83 311.6 200 80.5
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 6.4e-83 311.2 198 81.8
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 6.4e-83 311.2 195 82.6
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.1e-82 310.5 198 81.8
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.1e-82 310.5 198 83.3
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 1.9e-82 309.7 195 82.6
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.9e-82 309.7 193 84.5
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 2.4e-82 309.3 195 82.6
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 3.2e-82 308.9 195 83.1
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 3.2e-82 308.9 195 83.1
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.2e-82 308.9 195 82.6
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 3.2e-82 308.9 203 79.8
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 4.1e-82 308.5 195 82.1
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.4e-82 308.1 195 83.6
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.4e-82 308.1 195 83.6
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 5.4e-82 308.1 196 82.1
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 7.1e-82 307.8 195 82.1
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.2e-81 307.0 195 80.5
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-81 307.0 195 81.0
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.6e-81 306.6 198 81.3
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 2.1e-81 306.2 195 81.0
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 2.7e-81 305.8 195 81.5
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.5e-81 305.4 186 84.9
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.5e-81 305.4 195 81.0
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 3.5e-81 305.4 198 80.8
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.6e-81 305.1 195 81.0
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 4.6e-81 305.1 195 80.5
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 6.0e-81 304.7 195 83.1
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 7.8e-81 304.3 195 81.5
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.3e-80 303.5 195 81.5
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.3e-80 303.5 198 80.8
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.7e-80 303.1 198 79.3
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.7e-80 303.1 198 79.3
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 1.7e-80 303.1 201 79.6
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 2.3e-80 302.8 194 79.4
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.9e-80 302.0 198 79.8
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 3.9e-80 302.0 197 79.7
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.9e-80 302.0 197 79.7
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 3.9e-80 302.0 198 79.8
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.6e-80 301.2 197 80.2
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 8.6e-80 300.8 198 79.8
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 8.6e-80 300.8 198 79.8
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 8.6e-80 300.8 198 79.8
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 8.6e-80 300.8 198 79.8
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 8.6e-80 300.8 198 79.8
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 8.6e-80 300.8 198 79.8
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 8.6e-80 300.8 192 79.2
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 8.6e-80 300.8 195 79.5
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 8.6e-80 300.8 195 79.5
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 1.1e-79 300.4 209 75.6
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.1e-79 300.4 198 79.8
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.1e-79 300.4 195 79.5
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.5e-79 300.1 198 79.3
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.5e-79 300.1 197 79.7
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.5e-79 300.1 198 79.8
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 2.5e-79 299.3 195 80.0
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 2.5e-79 299.3 195 79.5
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 4.3e-79 298.5 189 81.5
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 5.6e-79 298.1 198 78.8
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 5.6e-79 298.1 198 79.3
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 5.6e-79 298.1 198 79.8
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 7.3e-79 297.7 194 81.4
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 9.5e-79 297.4 198 76.8
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.2e-78 297.0 198 78.3
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.6e-78 296.6 198 78.3
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.6e-78 296.6 198 78.3
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 2.1e-78 296.2 198 78.3
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 2.1e-78 296.2 195 80.5
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.1e-78 296.2 195 79.5
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 2.1e-78 296.2 198 76.8
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 2.8e-78 295.8 198 78.3
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 8.1e-78 294.3 195 79.5
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.1e-77 293.9 195 78.5
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.4e-77 293.5 198 78.3
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.4e-77 293.5 195 77.9
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.4e-77 293.5 189 79.9
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.8e-77 293.1 209 76.1
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 2.3e-77 292.7 198 78.3
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 3.1e-77 292.4 193 79.8
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.1e-77 292.4 195 79.5
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 6.8e-77 291.2 190 80.5
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 1.2e-76 290.4 195 79.0
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.5e-76 290.0 192 80.2
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.0e-76 289.7 195 78.5
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 3.4e-76 288.9 195 78.5
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 4.9e-75 285.0 196 75.0
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 4.9e-75 285.0 193 78.8
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 4.6e-73 278.5 202 73.8
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 3.0e-72 275.8 255 61.2
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.9e-72 275.4 198 71.2
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 6.6e-72 274.6 250 63.2
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 8.6e-72 274.2 198 71.7
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.9e-71 273.1 189 75.1
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.9e-71 273.1 196 72.4
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 2.5e-71 272.7 181 76.8
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 3.3e-71 272.3 172 82.0
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 4.3e-71 271.9 195 72.8
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.8e-69 266.5 160 83.8
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 8.9e-69 264.2 177 79.1
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.4e-68 261.9 275 57.5
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 2.2e-67 259.6 262 58.4
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.2e-67 259.6 195 69.2
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 4.9e-67 258.5 161 80.7
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 6.4e-67 258.1 205 69.8
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.7e-65 252.7 203 68.0
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 6.0e-65 251.5 187 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 3.0e-64 249.2 183 69.4
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 3.0e-64 249.2 199 68.3
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 6.6e-64 248.1 182 70.9
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 4.3e-63 245.4 160 79.4
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 6.2e-62 241.5 159 75.5
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 9.6e-55 217.6 181 61.9
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 2.0e-52 209.9 196 61.2
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 3.4e-52 209.1 114 95.6
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.9e-47 193.4 191 59.2
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.6e-46 190.3 183 56.8
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 5.3e-37 158.7 107 80.4
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 2.7e-33 146.4 195 45.6
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 8.7e-32 141.4 89 80.9
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 8.7e-32 141.4 203 41.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 6.3e-30 135.2 96 74.0
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.7e-27 127.1 186 40.9
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.0e-24 117.9 183 39.9
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 7.4e-23 111.7 75 82.7
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 6.9e-21 105.1 87 62.1
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.2e-20 104.4 71 73.2
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 1.5e-20 104.0 65 80.0
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 4.5e-20 102.4 65 78.5
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 8.2e-14 81.6 187 35.8
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 2.7e-09 66.6 46 69.6


User provided reference genes

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