Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0180 Ceratophyllum demersum HOM05D001756 ORTHO05D001581 2.9e-35 151.4 77 100.0
CDE07G1556 Ceratophyllum demersum HOM05D001756 ORTHO05D001581 2.0e-28 128.6 78 87.2
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 3.2e-10 68.2 79 51.9
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 7.2e-10 67.0 76 47.4
Nn5g30652 Nelumbo nucifera HOM05D001756 ORTHO05D001581 2.1e-09 65.5 75 52.0
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.1e-09 65.5 76 51.3
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 2.1e-09 65.5 76 51.3
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 2.7e-09 65.1 77 51.9
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 3.6e-09 64.7 78 46.2
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 6.1e-09 63.9 78 48.7
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 6.1e-09 63.9 78 48.7
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 6.1e-09 63.9 78 46.2
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 7.9e-09 63.5 78 47.4
Gohir.D06G022100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 7.9e-09 63.5 76 48.7
Gorai.010G026700 Gossypium raimondii HOM05D001756 ORTHO05D001581 7.9e-09 63.5 76 48.7
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.4e-08 62.8 78 43.6
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 1.4e-08 62.8 78 44.9
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 1.4e-08 62.8 78 46.2
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 1.4e-08 62.8 76 47.4
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.8e-08 62.4 76 48.7
PSO017G5266 Papaver somniferum HOM05D001756 ORTHO05D001581 1.8e-08 62.4 76 53.9
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 2.3e-08 62.0 78 47.4
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 2.3e-08 62.0 78 47.4
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 3.0e-08 61.6 80 43.8
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 3.0e-08 61.6 80 43.8
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 3.0e-08 61.6 76 50.0
Medtr1g017700 Medicago truncatula HOM05D001756 ORTHO05D001581 3.0e-08 61.6 80 47.5
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 3.9e-08 61.2 77 49.4
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.9e-08 61.2 82 48.8
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 3.9e-08 61.2 78 42.3
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 3.9e-08 61.2 76 47.4
Gohir.A06G025000 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.9e-08 61.2 76 47.4
TPR.G22954 Trifolium pratense HOM05D001756 ORTHO05D001581 3.9e-08 61.2 78 46.2
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 5.1e-08 60.8 78 41.0
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 5.1e-08 60.8 76 43.4
Nitab4.5_0002525g0020 Nicotiana tabacum HOM05D001756 ORTHO05D001581 5.1e-08 60.8 77 50.6
A04p17430 Brassica napus HOM05D001756 ORTHO05D001581 6.7e-08 60.5 82 42.7
C04p52190 Brassica napus HOM05D001756 ORTHO05D001581 6.7e-08 60.5 82 42.7
BraA04t17366Z Brassica rapa HOM05D001756 ORTHO05D001581 6.7e-08 60.5 82 42.7
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 6.7e-08 60.5 77 46.8
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 8.8e-08 60.1 78 44.9
BcaC02g08589 Brassica carinata HOM05D001756 ORTHO05D001581 8.8e-08 60.1 82 42.7
BolC4t26796H Brassica oleracea HOM05D001756 ORTHO05D001581 8.8e-08 60.1 82 42.7
MBI16_g16475_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 8.8e-08 60.1 79 48.1
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 8.8e-08 60.1 80 45.0
BcaB06g27846 Brassica carinata HOM05D001756 ORTHO05D001581 1.1e-07 59.7 82 42.7
COL.COLO4_11608 Corchorus olitorius HOM05D001756 ORTHO05D001581 1.1e-07 59.7 80 45.0
MBI16_g32087_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 1.1e-07 59.7 79 48.1
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 1.1e-07 59.7 75 42.7
Medtr1g017590 Medicago truncatula HOM05D001756 ORTHO05D001581 1.5e-07 59.3 76 46.1
PSO170G3613 Papaver somniferum HOM05D001756 ORTHO05D001581 1.5e-07 59.3 76 53.9
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 1.5e-07 59.3 76 46.1
arahy.Tifrunner.gnm1.ann1.200WTN Arachis hypogaea HOM05D001756 ORTHO05D001581 2.0e-07 58.9 82 46.3
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.0e-07 58.9 77 48.1
Cc07_g07320 Coffea canephora HOM05D001756 ORTHO05D001581 2.0e-07 58.9 80 47.5
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 2.0e-07 58.9 79 49.4
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 2.0e-07 58.9 80 41.2
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.6e-07 58.5 81 43.2
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 2.6e-07 58.5 77 46.8
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 2.6e-07 58.5 77 46.8
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 2.6e-07 58.5 80 46.2
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 2.6e-07 58.5 76 47.4
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 2.6e-07 58.5 80 43.8
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.6e-07 58.5 77 44.2
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.6e-07 58.5 77 44.2
SalBow3G1129 Salvia bowleyana HOM05D001756 ORTHO05D001581 2.6e-07 58.5 73 47.9
Eucgr.I02494 Eucalyptus grandis HOM05D001756 ORTHO05D001581 3.3e-07 58.2 76 47.4
MBI16_g27034_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 3.3e-07 58.2 74 45.9
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 3.3e-07 58.2 79 45.6
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.4e-07 57.8 77 45.5
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 4.4e-07 57.8 83 41.0
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 4.4e-07 57.8 83 45.8
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 4.4e-07 57.8 83 45.8
Lsat_1_v5_gn_3_86460 Lactuca sativa HOM05D001756 ORTHO05D001581 4.4e-07 57.8 75 49.3
Lj2g0014409 Lotus japonicus HOM05D001756 ORTHO05D001581 4.4e-07 57.8 76 47.4
arahy.Tifrunner.gnm1.ann1.APU27B Arachis hypogaea HOM05D001756 ORTHO05D001581 5.7e-07 57.4 82 46.3
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.7e-07 57.4 79 45.6
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 5.7e-07 57.4 79 46.8
Phvul.003G233400 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 5.7e-07 57.4 76 50.0
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 7.4e-07 57.0 78 46.2
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 7.4e-07 57.0 80 36.2
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 7.4e-07 57.0 80 36.2
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 7.4e-07 57.0 77 42.9
Sabra02G0091600 Salix brachista HOM05D001756 ORTHO05D001581 7.4e-07 57.0 76 50.0
HanXRQChr09g0255351 Helianthus annuus HOM05D001756 ORTHO05D001581 9.7e-07 56.6 81 44.4
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 1.3e-06 56.2 69 44.9
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.3e-06 56.2 76 46.1
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.3e-06 56.2 86 39.5
Peaxi162Scf00340g00412 Petunia axillaris HOM05D001756 ORTHO05D001581 1.3e-06 56.2 77 46.8
Psat2g172320 Pisum sativum HOM05D001756 ORTHO05D001581 1.3e-06 56.2 76 48.7
PGR142G2395 Punica granatum HOM05D001756 ORTHO05D001581 1.3e-06 56.2 76 44.7
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-06 56.2 80 45.0
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.7e-06 55.8 63 52.4
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 1.7e-06 55.8 69 49.3
CiPaw.08G051600 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.7e-06 55.8 83 44.6
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 1.7e-06 55.8 84 42.9
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.7e-06 55.8 80 43.8
Lalb_Chr09g0323711 Lupinus albus HOM05D001756 ORTHO05D001581 1.7e-06 55.8 78 44.9
Nn6g34517 Nelumbo nucifera HOM05D001756 ORTHO05D001581 1.7e-06 55.8 77 46.8
PGR042G3192 Punica granatum HOM05D001756 ORTHO05D001581 1.7e-06 55.8 75 48.0
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 1.7e-06 55.8 72 51.4
arahy.Tifrunner.gnm1.ann1.HNL259 Arachis hypogaea HOM05D001756 ORTHO05D001581 2.2e-06 55.5 83 44.6
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.2e-06 55.5 78 47.4
FAN15G0430 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.2e-06 55.5 83 45.8
Glyma.06G048200 Glycine max HOM05D001756 ORTHO05D001581 2.2e-06 55.5 81 46.9
Medtr5g015140 Medicago truncatula HOM05D001756 ORTHO05D001581 2.2e-06 55.5 73 46.6
Phvul.001G029200 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 2.2e-06 55.5 76 44.7
Psat6g214400 Pisum sativum HOM05D001756 ORTHO05D001581 2.2e-06 55.5 68 45.6
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 2.2e-06 55.5 78 42.3
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.8e-06 55.1 71 46.5
CiPaw.05G020600 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.8e-06 55.1 69 52.2
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 2.8e-06 55.1 74 45.9
Thhalv10000381m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 2.8e-06 55.1 83 38.6
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 2.8e-06 55.1 76 44.7
Sp4g01910 Schrenkiella parvula HOM05D001756 ORTHO05D001581 2.8e-06 55.1 84 36.9
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 2.8e-06 55.1 77 42.9
GSVIVG01009309001 Vitis vinifera HOM05D001756 ORTHO05D001581 2.8e-06 55.1 82 45.1
AT2G22860 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 3.7e-06 54.7 85 38.8
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 3.7e-06 54.7 69 46.4
Carub.0004s0199 Capsella rubella HOM05D001756 ORTHO05D001581 3.7e-06 54.7 82 37.8
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 3.7e-06 54.7 79 45.6
PSO675G3090 Papaver somniferum HOM05D001756 ORTHO05D001581 3.7e-06 54.7 81 42.0
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 3.7e-06 54.7 79 49.4
AL4G12440 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 4.8e-06 54.3 83 39.8
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 4.8e-06 54.3 69 44.9
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.8e-06 54.3 66 45.5
FAN27G1437 Fragaria x ananassa HOM05D001756 ORTHO05D001581 4.8e-06 54.3 83 44.6
TPR.G13182 Trifolium pratense HOM05D001756 ORTHO05D001581 4.8e-06 54.3 80 43.8
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 4.8e-06 54.3 76 44.7
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 4.8e-06 54.3 79 44.3
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 6.3e-06 53.9 63 54.0
ATR0739G092 Amborella trichopoda HOM05D001756 ORTHO05D001581 6.3e-06 53.9 73 43.8
CSS0014839 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 6.3e-06 53.9 79 41.8
CSS0047712 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 6.3e-06 53.9 79 41.8
CDE04G1752 Ceratophyllum demersum HOM05D001756 ORTHO05D001581 6.3e-06 53.9 75 44.0
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 6.3e-06 53.9 75 44.0
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 6.3e-06 53.9 72 51.4
Prupe.8G150200 Prunus persica HOM05D001756 ORTHO05D001581 6.3e-06 53.9 78 46.2
Sc08g0004340 Simmondsia chinensis HOM05D001756 ORTHO05D001581 6.3e-06 53.9 74 36.5
PGSC0003DMG400021407 Solanum tuberosum HOM05D001756 ORTHO05D001581 6.3e-06 53.9 76 43.4
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 6.3e-06 53.9 76 40.8
vmacro21422 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 6.3e-06 53.9 73 45.2
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 8.2e-06 53.5 86 39.5


User provided reference genes

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