Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 4.4e-101 371.3 191 100.0
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 3.0e-57 225.7 190 57.9
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 3.0e-57 225.7 190 60.0
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 3.9e-57 225.3 189 59.3
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 5.1e-57 224.9 176 61.9
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 6.7e-57 224.6 190 58.4
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 6.7e-57 224.6 176 61.9
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 8.7e-57 224.2 189 59.3
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.5e-56 223.4 184 60.9
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 2.5e-56 222.6 179 61.5
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 4.3e-56 221.9 189 58.2
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 7.4e-56 221.1 189 57.7
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 7.4e-56 221.1 190 58.4
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 9.6e-56 220.7 176 60.2
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 2.1e-55 219.5 189 58.2
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.1e-55 219.5 189 57.7
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 2.8e-55 219.2 175 60.0
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.8e-55 219.2 176 60.8
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 3.7e-55 218.8 190 57.4
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 3.7e-55 218.8 188 58.5
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 8.1e-55 217.6 190 58.4
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 8.1e-55 217.6 190 57.9
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.4e-54 216.9 176 59.1
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.4e-54 216.9 189 57.7
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.4e-54 216.9 175 61.7
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.8e-54 216.5 188 58.5
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.8e-54 216.5 190 54.7
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.8e-54 216.5 190 54.7
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.4e-54 216.1 189 57.1
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.4e-54 216.1 191 57.1
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 3.1e-54 215.7 189 57.7
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 3.1e-54 215.7 174 59.8
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.0e-54 215.3 190 54.2
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.0e-54 215.3 190 54.2
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 5.3e-54 214.9 190 57.4
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 6.9e-54 214.5 176 59.1
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 6.9e-54 214.5 176 60.2
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 6.9e-54 214.5 189 57.1
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 9.0e-54 214.2 176 58.0
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 9.0e-54 214.2 176 61.4
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.2e-53 213.8 189 56.6
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.2e-53 213.8 176 61.4
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.2e-53 213.8 189 57.1
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.0e-53 213.0 191 59.2
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.0e-53 213.0 188 54.3
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.0e-53 213.0 189 55.6
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 2.6e-53 212.6 175 61.1
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 3.4e-53 212.2 174 58.6
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 3.4e-53 212.2 174 58.6
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 3.4e-53 212.2 176 59.7
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 7.6e-53 211.1 189 58.2
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 7.6e-53 211.1 198 53.0
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.0e-52 210.7 176 56.2
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.0e-52 210.7 167 61.7
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.0e-52 210.7 189 54.5
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.0e-52 210.7 189 54.5
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.3e-52 210.3 176 57.4
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 2.2e-52 209.5 179 57.0
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.9e-52 209.1 176 56.8
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 3.8e-52 208.8 189 55.0
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.9e-52 208.4 176 55.1
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 4.9e-52 208.4 178 57.9
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 8.4e-52 207.6 174 56.9
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 1.9e-51 206.5 174 56.3
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 1.9e-51 206.5 175 56.0
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.9e-51 206.5 165 60.6
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.9e-51 206.5 181 57.5
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.9e-51 206.5 177 58.2
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.5e-51 206.1 176 55.7
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.5e-51 206.1 176 55.7
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 2.5e-51 206.1 175 55.4
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 2.5e-51 206.1 189 55.6
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 5.5e-51 204.9 175 58.3
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 5.5e-51 204.9 171 57.9
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 5.5e-51 204.9 182 56.0
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 7.1e-51 204.5 178 54.5
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 9.3e-51 204.1 205 51.7
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.2e-50 203.8 174 55.2
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.6e-50 203.4 178 56.2
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.6e-50 203.4 183 56.3
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.1e-50 203.0 174 55.7
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 2.1e-50 203.0 174 55.7
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 2.1e-50 203.0 174 55.7
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 2.1e-50 203.0 174 55.7
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 6.0e-50 201.4 176 57.4
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 1.0e-49 200.7 174 54.6
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 1.0e-49 200.7 174 54.6
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.8e-49 199.9 178 55.1
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.3e-49 199.5 149 66.4
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 5.1e-49 198.4 176 53.4
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.5e-48 196.8 176 54.0
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.5e-48 196.8 178 55.6
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.7e-48 194.9 190 52.1
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.6e-47 193.4 164 60.4
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.1e-47 193.0 178 53.9
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.8e-47 192.6 164 60.4
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.8e-47 192.6 164 60.4
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-46 190.3 189 54.0
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.4e-46 189.5 161 56.5
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.1e-46 189.1 161 59.0
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 9.0e-46 187.6 157 57.3
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 9.0e-46 187.6 160 57.5
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 2.0e-45 186.4 169 51.5
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 2.0e-45 186.4 155 57.4
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 3.4e-45 185.7 185 53.5
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 3.4e-45 185.7 185 53.5
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.3e-44 183.7 157 56.7
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 3.8e-44 182.2 146 63.0
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 5.0e-44 181.8 159 59.1
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 8.5e-44 181.0 159 58.5
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 4.2e-43 178.7 157 55.4
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.2e-42 177.2 144 56.9
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.6e-42 175.6 159 56.0
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 4.6e-42 175.3 153 57.5
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 1.0e-41 174.1 157 54.1
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 3.9e-41 172.2 174 50.6
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 3.9e-41 172.2 158 56.3
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 8.7e-41 171.0 174 50.0
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.5e-40 170.2 137 58.4
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.9e-40 169.9 137 60.6
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.5e-40 169.5 157 54.1
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 5.7e-40 168.3 158 51.3
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 7.4e-40 167.9 157 54.8
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 9.7e-40 167.5 146 54.8
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.6e-39 166.8 156 53.2
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.6e-39 166.8 157 52.9
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 2.2e-39 166.4 157 52.2
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 6.3e-39 164.9 157 51.0
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 6.3e-39 164.9 181 46.4
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.4e-38 163.7 143 60.1
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.9e-38 161.4 125 63.2
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.8e-36 155.6 172 47.1
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.1e-35 154.1 167 45.5
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 9.4e-35 151.0 118 61.9
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 7.9e-34 147.9 180 43.9
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 3.0e-33 146.0 161 47.8
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.5e-32 143.7 163 47.9
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.5e-32 143.7 163 47.9
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 2.6e-32 142.9 137 49.6
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.4e-32 142.1 106 65.1
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.3e-31 140.6 106 64.2
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 3.8e-28 129.0 180 41.7
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 3.8e-28 129.0 180 41.7
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 6.5e-28 128.3 107 56.1
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 3.9e-25 119.0 169 41.4
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.1e-19 100.9 193 32.6
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.0e-17 94.4 86 54.7
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 2.0e-13 80.1 157 33.1


User provided reference genes

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