Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 4.2e-130 468.0 230 100.0
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 5.5e-74 281.6 208 62.5
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.5e-71 273.5 210 64.3
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 3.7e-70 268.9 210 65.2
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 1.1e-69 267.3 206 62.1
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 1.8e-69 266.5 210 57.6
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.2e-68 263.8 219 59.4
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 1.2e-68 263.8 211 56.4
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 2.0e-68 263.1 211 55.9
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 3.5e-68 262.3 206 60.7
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 1.0e-67 260.8 206 59.2
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 1.0e-67 260.8 207 59.9
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 1.7e-67 260.0 212 59.9
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 2.3e-67 259.6 206 60.7
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 2.3e-67 259.6 212 59.9
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 1.1e-66 257.3 206 60.7
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 1.5e-66 256.9 206 60.2
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 1.5e-66 256.9 206 61.2
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 2.5e-66 256.1 207 60.4
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 3.3e-66 255.8 204 59.3
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 7.2e-66 254.6 206 58.7
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 7.2e-66 254.6 212 57.5
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 2.8e-65 252.7 210 57.1
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 4.7e-65 251.9 208 56.7
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 8.0e-65 251.1 208 59.1
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 1.4e-64 250.4 204 57.8
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 1.4e-64 250.4 208 55.8
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 4.0e-64 248.8 203 60.1
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 5.2e-64 248.4 208 57.7
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 6.8e-64 248.1 207 58.0
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.5e-63 246.9 206 58.3
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.5e-63 246.9 206 58.3
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 1.5e-63 246.9 202 57.9
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 2.0e-63 246.5 206 58.7
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 2.6e-63 246.1 210 56.2
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 3.4e-63 245.7 208 57.7
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 4.4e-63 245.4 206 56.3
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 4.4e-63 245.4 208 55.8
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 7.5e-63 244.6 206 58.7
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 1.3e-62 243.8 205 54.6
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 2.8e-62 242.7 206 53.9
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 2.8e-62 242.7 201 55.7
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 3.7e-62 242.3 206 58.3
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 3.7e-62 242.3 189 59.8
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 4.9e-62 241.9 205 54.6
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 4.9e-62 241.9 210 55.2
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 6.3e-62 241.5 209 56.9
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 8.3e-62 241.1 210 54.3
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 8.3e-62 241.1 210 56.2
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 1.1e-61 240.7 207 55.1
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.1e-61 240.7 206 53.9
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 1.4e-61 240.4 205 54.1
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 1.4e-61 240.4 207 56.5
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 1.4e-61 240.4 217 53.0
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 1.4e-61 240.4 209 54.5
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 1.8e-61 240.0 205 54.1
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 2.4e-61 239.6 208 53.4
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 2.4e-61 239.6 209 55.0
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 3.1e-61 239.2 204 54.4
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 3.1e-61 239.2 208 52.4
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 4.1e-61 238.8 205 54.1
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 4.1e-61 238.8 205 55.1
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 7.0e-61 238.0 205 54.6
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 1.2e-60 237.3 205 53.7
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 1.6e-60 236.9 206 53.9
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.7e-60 236.1 200 54.5
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 3.5e-60 235.7 212 56.6
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 3.5e-60 235.7 208 57.2
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 4.5e-60 235.3 205 55.1
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 5.9e-60 235.0 205 54.6
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 7.8e-60 234.6 226 51.8
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 1.3e-59 233.8 205 56.1
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 2.3e-59 233.0 207 52.2
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 2.9e-59 232.6 206 55.3
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 6.6e-59 231.5 206 54.4
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 1.1e-58 230.7 206 52.4
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 1.5e-58 230.3 206 52.4
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 1.2e-57 227.3 206 53.9
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.2e-57 227.3 206 53.9
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 2.1e-57 226.5 206 53.9
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.8e-57 226.1 205 53.7
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 1.4e-56 223.8 218 47.7
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 5.2e-56 221.9 206 53.9
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 2.6e-55 219.5 194 55.7
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 2.6e-55 219.5 206 50.5
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 3.4e-55 219.2 173 60.1
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 3.4e-55 219.2 212 47.2
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 1.7e-54 216.9 214 50.9
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.4e-53 213.0 219 49.3
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 7.3e-50 201.4 188 54.8
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 3.6e-49 199.1 212 49.1
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.6e-47 193.0 208 45.7
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.7e-46 190.3 211 49.3
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.7e-46 190.3 204 45.6
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 2.4e-45 186.4 160 55.0
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.6e-44 183.7 200 50.5
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 5.6e-42 175.3 208 47.6
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 9.5e-42 174.5 190 46.8
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 8.1e-41 171.4 209 45.5
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 2.3e-40 169.9 246 39.4
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 2.0e-39 166.8 220 41.4
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 1.7e-38 163.7 138 57.2
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 3.7e-38 162.5 137 51.8
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 8.3e-38 161.4 208 44.2
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 2.4e-37 159.8 212 40.6
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 1.6e-36 157.1 141 55.3
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 3.5e-36 156.0 137 49.6
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 1.7e-35 153.7 112 59.8
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 1.5e-34 150.6 130 55.4
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 3.3e-34 149.4 110 60.0
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 2.4e-32 143.3 111 58.6
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 1.3e-27 127.5 128 48.4
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.0e-23 113.6 113 45.1
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 1.7e-22 110.5 179 36.3
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 8.4e-22 108.2 88 59.1
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 1.4e-21 107.5 167 35.9
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.9e-21 107.1 96 49.0
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 9.3e-21 104.8 105 42.9
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.7e-20 103.2 96 47.9
SEGI_29343 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 4.6e-20 102.4 97 52.6
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.0e-19 101.3 102 45.1
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 1.1e-18 97.8 179 36.3
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 1.5e-18 97.4 209 31.1
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 2.1e-17 93.6 66 57.6
CSS0015528 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 3.6e-17 92.8 74 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.5e-15 87.4 68 48.5
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 4.9e-14 82.4 73 47.9
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 1.3e-11 74.3 166 31.9
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.5e-10 70.1 89 37.1
AagrBONN_evm.TU.Sc2ySwM_344.1682 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.6e-09 67.4 103 42.7
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 2.8e-09 66.6 50 54.0
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 2.4e-08 63.5 175 25.7
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 5.3e-08 62.4 149 28.9
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 2.0e-07 60.5 156 28.2
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 2.6e-07 60.1 214 25.7
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 7.6e-07 58.5 41 61.0
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.0e-06 58.2 49 44.9
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 1.3e-06 57.8 166 27.1
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.7e-06 57.4 103 38.8
Ca_21220_v3 Cicer arietinum L. HOM05D006247 ORTHO05D007684 2.9e-06 56.6 178 28.1
DCAR_030997 Daucus carota HOM05D005456 ORTHO05D006805 4.9e-06 55.8 149 27.5
Phvul.003G146300 Phaseolus vulgaris HOM05D006247 ORTHO05D007684 4.9e-06 55.8 178 26.4
PGR102G2305 Punica granatum HOM05D006247 ORTHO05D007684 4.9e-06 55.8 205 24.9
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 8.4e-06 55.1 228 27.2


User provided reference genes

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