Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 0.0e+00 1386.7 692 100.0
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 1.4e-298 1029.2 819 64.6
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 2.7e-297 1025.0 817 64.5
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 6.6e-296 1020.4 817 64.6
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 8.9e-293 1010.0 812 64.2
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 2.6e-292 1008.4 814 65.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 2.9e-288 995.0 817 62.3
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 8.6e-288 993.4 810 63.1
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 1.9e-287 992.3 823 62.6
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 2.8e-286 988.4 813 61.9
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.8e-285 985.7 815 62.9
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.3e-285 985.3 821 62.4
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 3.1e-285 984.9 813 62.0
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 4.0e-285 984.6 813 61.7
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.7e-283 979.2 815 62.5
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 2.9e-283 978.4 817 61.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 4.1e-282 974.5 817 60.7
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 5.4e-282 974.2 817 61.0
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 9.2e-282 973.4 817 61.2
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.2e-281 973.0 814 61.8
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 2.0e-281 972.2 817 61.3
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 2.7e-281 971.8 817 60.7
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.7e-281 971.8 841 60.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 3.5e-281 971.5 817 60.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.6e-281 971.1 813 61.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 6.0e-281 970.7 817 61.0
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 7.8e-281 970.3 817 61.9
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 2.3e-280 968.8 814 60.9
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 3.0e-280 968.4 817 60.8
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 3.9e-280 968.0 817 61.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 8.6e-280 966.8 817 60.2
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 1.1e-279 966.5 817 60.5
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 1.1e-279 966.5 817 60.6
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.9e-279 965.7 817 61.4
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 1.9e-279 965.7 815 61.1
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 3.3e-279 964.9 817 60.0
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 3.3e-279 964.9 817 60.7
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 4.3e-279 964.5 812 61.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 2.1e-278 962.2 817 60.5
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 6.2e-278 960.7 818 60.3
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 1.1e-277 959.9 817 60.1
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 1.8e-277 959.1 817 60.2
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 2.3e-277 958.7 817 59.6
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 5.2e-277 957.6 771 64.5
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 6.8e-277 957.2 816 60.5
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 2.6e-276 955.3 817 60.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 3.4e-276 954.9 817 60.3
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 2.2e-275 952.2 817 60.1
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 2.9e-275 951.8 816 60.3
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 2.9e-275 951.8 820 60.1
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 3.7e-275 951.4 816 61.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 4.9e-275 951.0 817 59.2
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 4.9e-275 951.0 828 59.4
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 6.4e-275 950.7 817 61.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 8.3e-275 950.3 829 59.6
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 1.1e-274 949.9 817 60.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 1.4e-274 949.5 816 60.3
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 4.1e-274 948.0 823 59.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 7.1e-274 947.2 826 59.4
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 1.2e-273 946.4 813 59.5
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 1.2e-273 946.4 818 60.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 6.0e-273 944.1 813 59.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 6.0e-273 944.1 813 59.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 6.0e-273 944.1 815 60.7
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 6.0e-273 944.1 815 60.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 1.7e-272 942.6 817 59.9
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 1.1e-271 939.9 820 60.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 7.3e-271 937.2 819 59.2
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 3.6e-270 934.9 827 59.1
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 3.6e-270 934.9 818 58.4
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 4.7e-270 934.5 817 58.0
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 8.1e-270 933.7 797 59.8
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 1.1e-269 933.3 815 58.3
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 1.4e-269 932.9 812 60.7
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 3.1e-269 931.8 820 58.3
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 8.9e-269 930.2 845 57.8
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 8.9e-269 930.2 818 57.9
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.0e-268 929.1 812 60.6
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 2.6e-268 928.7 812 59.5
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 7.6e-268 927.2 812 59.1
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 7.6e-268 927.2 812 59.1
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 7.6e-268 927.2 812 59.1
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.3e-267 926.4 812 60.3
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 3.7e-267 924.9 815 57.9
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.7e-267 924.9 792 60.1
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 1.4e-266 922.9 804 59.0
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 2.4e-266 922.2 812 57.9
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 2.4e-266 922.2 812 58.1
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 2.4e-266 922.2 812 58.1
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 5.4e-266 921.0 812 58.1
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 7.1e-266 920.6 816 58.0
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 9.2e-266 920.2 812 58.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 9.2e-266 920.2 888 55.1
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 1.2e-265 919.8 812 58.1
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 1.6e-265 919.5 812 58.1
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 1.6e-265 919.5 812 58.1
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 2.1e-265 919.1 814 57.0
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 2.7e-265 918.7 886 54.7
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 4.6e-265 917.9 818 57.7
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 7.8e-265 917.1 888 55.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 3.0e-264 915.2 816 58.7
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 5.6e-263 911.0 819 58.6
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 3.6e-262 908.3 788 60.5
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 4.4e-260 901.4 837 56.0
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 5.8e-260 901.0 813 58.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 1.7e-259 899.4 839 55.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 3.2e-258 895.2 808 58.5
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.9e-256 888.3 735 63.0
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 5.6e-255 884.4 802 57.6
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 5.3e-253 877.9 831 55.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.2e-249 866.7 737 60.2
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 5.1e-248 861.3 698 64.6
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.3e-238 830.1 728 61.0
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 2.9e-235 818.9 704 60.9
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 2.9e-235 818.9 688 62.5
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.9e-231 806.2 671 63.2
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 6.7e-216 754.6 821 49.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 7.7e-212 741.1 820 48.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.1e-205 720.7 862 45.7
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 2.9e-203 712.6 806 46.4
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 1.8e-200 703.4 816 46.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.0e-191 673.3 589 59.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.3e-174 617.5 601 55.7
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 7.8e-164 581.6 694 48.7
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.0e-163 578.9 454 63.4
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.3e-162 576.2 694 44.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.6e-151 538.5 333 85.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 5.8e-143 512.3 577 48.0
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.2e-140 504.6 446 60.1
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 6.0e-140 502.3 303 77.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.3e-115 420.6 412 55.3
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.8e-96 357.8 305 62.6
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 4.1e-72 276.9 138 94.2
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 9.5e-69 265.8 329 45.3
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 3.7e-57 227.3 136 75.0
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.0e-52 209.5 205 55.1
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 9.2e-40 169.5 119 67.2
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 6.2e-28 130.2 73 80.8
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 6.9e-27 126.7 156 44.9
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 3.0e-14 84.7 76 48.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.4e-11 75.9 49 71.4
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.3e-08 63.2 33 84.8
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 9.3e-08 63.2 33 84.8
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.8e-06 58.9 46 56.5


User provided reference genes

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