Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 2.0e-186 655.6 327 100.0
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 6.6e-113 411.4 286 72.7
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 2.3e-110 402.9 330 64.8
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 7.8e-106 387.9 308 65.9
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 1.0e-105 387.5 290 67.9
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 2.3e-105 386.3 271 72.3
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 8.6e-105 384.4 265 73.2
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 2.5e-104 382.9 266 73.7
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 2.5e-104 382.9 272 70.6
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 3.3e-104 382.5 271 70.8
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 4.3e-104 382.1 308 65.6
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 5.6e-104 381.7 272 69.5
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 5.6e-104 381.7 334 63.2
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 7.3e-104 381.3 266 72.2
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 9.5e-104 380.9 308 65.6
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 2.1e-103 379.8 282 68.4
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 1.4e-102 377.1 303 63.7
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 2.3e-102 376.3 271 69.4
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 4.0e-102 375.6 264 71.6
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 5.2e-102 375.2 271 67.9
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 6.8e-102 374.8 265 69.4
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.2e-101 374.0 325 60.9
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.2e-101 374.0 329 59.3
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 1.2e-101 374.0 292 64.4
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 1.5e-101 373.6 302 63.2
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 2.0e-101 373.2 265 70.9
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 2.6e-101 372.9 264 71.2
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 3.4e-101 372.5 293 63.8
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 4.4e-101 372.1 319 63.3
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 5.8e-101 371.7 272 68.0
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 5.8e-101 371.7 264 70.5
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 9.9e-101 370.9 270 68.9
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 9.9e-101 370.9 266 70.3
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 1.3e-100 370.5 277 68.2
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 1.3e-100 370.5 263 73.0
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 2.9e-100 369.4 263 71.1
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 4.9e-100 368.6 280 65.4
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 6.4e-100 368.2 289 66.4
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 1.1e-99 367.5 273 67.8
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 1.1e-99 367.5 280 66.4
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 2.4e-99 366.3 271 66.8
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 3.2e-99 365.9 273 67.4
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 4.1e-99 365.5 291 62.2
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 4.1e-99 365.5 303 62.7
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 5.4e-99 365.2 292 63.0
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 9.2e-99 364.4 303 62.0
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 9.2e-99 364.4 303 62.0
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 1.2e-98 364.0 270 67.0
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 1.2e-98 364.0 290 63.1
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 1.2e-98 364.0 270 66.7
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 2.7e-98 362.8 275 65.1
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 2.7e-98 362.8 270 66.3
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 3.5e-98 362.5 323 59.8
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 4.6e-98 362.1 270 66.3
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 4.6e-98 362.1 270 66.3
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 7.8e-98 361.3 285 66.3
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 7.8e-98 361.3 265 66.8
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 7.8e-98 361.3 280 65.0
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 1.3e-97 360.5 303 61.1
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 1.3e-97 360.5 293 62.1
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 1.7e-97 360.1 304 61.8
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.7e-97 360.1 291 62.5
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 3.0e-97 359.4 269 67.3
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 5.1e-97 358.6 277 65.3
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 5.1e-97 358.6 308 63.6
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 8.6e-97 357.8 270 64.1
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 1.1e-96 357.5 268 67.9
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 3.3e-96 355.9 290 63.8
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 1.2e-95 354.0 269 66.2
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 4.7e-95 352.1 267 66.3
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 6.2e-95 351.7 272 65.8
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 1.4e-94 350.5 290 62.1
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 5.2e-94 348.6 290 61.7
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 6.8e-94 348.2 286 62.6
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 8.9e-94 347.8 296 61.5
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 2.2e-92 343.2 316 57.3
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 2.9e-92 342.8 266 66.5
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 4.9e-92 342.0 300 60.0
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 8.4e-92 341.3 310 58.4
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.9e-91 340.1 271 64.2
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 1.6e-90 337.0 313 57.8
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 4.6e-90 335.5 326 56.1
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 5.1e-89 332.0 295 58.3
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 7.3e-88 328.2 270 61.5
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 2.8e-87 326.2 306 55.9
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 8.4e-84 314.7 266 63.9
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.9e-83 313.5 267 61.0
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 7.1e-83 311.6 313 55.3
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 2.1e-82 310.1 220 71.4
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 1.9e-80 303.5 249 59.8
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.2e-77 294.3 222 69.4
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 2.6e-77 293.1 254 55.9
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 4.5e-77 292.4 272 57.4
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 7.6e-77 291.6 232 66.4
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 9.9e-77 291.2 233 65.2
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 5.4e-75 285.4 247 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 9.3e-75 284.6 255 56.5
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 7.9e-74 281.6 305 50.8
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 1.3e-73 280.8 212 68.4
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 2.5e-72 276.6 231 60.2
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.1e-67 261.2 235 59.6
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 1.0e-60 238.0 217 62.2
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.1e-59 234.6 299 44.1
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 4.2e-59 232.6 212 55.7
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 9.3e-59 231.5 254 48.0
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.8e-52 209.5 157 68.2
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 6.3e-47 192.2 177 62.1
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 2.0e-45 187.2 220 45.9
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 2.5e-43 180.3 152 64.5
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 2.1e-42 177.2 147 64.6
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 6.1e-42 175.6 181 54.1
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 1.8e-41 174.1 181 53.6
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 1.8e-41 174.1 281 38.1
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 5.7e-40 169.1 262 38.2
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 6.3e-31 139.0 147 56.5
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 4.7e-18 96.3 88 55.7
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 8.0e-18 95.5 176 31.2
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 3.5e-13 80.1 65 61.5
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 8.9e-09 65.5 45 62.2
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 1.4e-06 58.2 75 38.7


User provided reference genes

Program Settings