Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.9e-198 695.7 349 100.0
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 5.7e-131 471.5 353 68.8
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 7.5e-131 471.1 354 67.8
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 9.8e-131 470.7 362 67.1
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.7e-130 469.9 363 66.7
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.7e-130 469.9 362 66.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 4.1e-129 465.3 366 65.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.6e-128 463.4 358 64.0
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 2.0e-128 463.0 358 64.5
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 4.5e-128 461.8 361 65.9
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 4.5e-128 461.8 359 66.6
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 7.7e-128 461.1 362 66.9
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.7e-127 459.9 361 65.1
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 3.8e-127 458.8 358 64.2
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 5.0e-127 458.4 364 64.8
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 6.5e-127 458.0 364 65.7
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 6.5e-127 458.0 366 65.0
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.5e-127 457.6 362 65.5
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.1e-126 457.2 358 64.2
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.5e-126 456.8 364 64.8
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.9e-126 456.4 366 64.8
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.2e-126 455.7 364 64.3
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 4.2e-126 455.3 363 66.7
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 5.5e-126 454.9 352 67.6
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.5e-126 454.9 359 65.7
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 7.2e-126 454.5 361 66.8
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 7.2e-126 454.5 363 65.8
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 9.5e-126 454.1 364 63.5
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.5e-126 454.1 365 64.7
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.6e-125 453.4 360 66.4
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.0e-124 450.7 353 64.0
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 2.3e-124 449.5 361 64.3
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.2e-124 448.4 362 65.7
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 8.8e-124 447.6 362 63.0
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.2e-123 447.2 348 66.1
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.2e-123 447.2 360 65.3
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 2.0e-123 446.4 352 64.8
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.6e-123 446.0 361 66.2
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.4e-123 445.7 347 66.9
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 3.4e-123 445.7 362 64.4
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 4.4e-123 445.3 353 67.1
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 4.4e-123 445.3 361 62.6
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.4e-123 445.3 368 63.6
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.2e-122 443.0 351 65.0
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.2e-122 443.0 362 64.4
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 2.4e-121 439.5 363 65.0
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 3.1e-121 439.1 362 63.8
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.7e-120 436.0 355 63.1
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.7e-120 436.0 386 60.9
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 4.5e-120 435.3 366 62.0
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 7.8e-120 434.5 349 63.3
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.7e-119 433.3 346 65.0
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.9e-119 432.6 420 56.4
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 3.8e-119 432.2 349 62.5
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.5e-118 430.3 350 62.9
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 1.9e-118 429.9 365 61.9
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 3.3e-118 429.1 341 64.8
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.6e-118 428.3 353 62.9
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 7.3e-118 427.9 368 62.2
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.2e-117 427.2 363 63.1
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.1e-117 424.9 346 63.3
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.0e-116 424.1 356 62.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.4e-116 423.7 329 68.4
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.8e-116 423.3 343 61.8
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 5.2e-116 421.8 364 56.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 5.2e-116 421.8 355 60.6
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.6e-115 419.5 329 66.3
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.6e-115 419.5 349 62.2
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 4.4e-115 418.7 316 63.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 5.7e-115 418.3 346 63.0
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 7.5e-115 417.9 328 66.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.8e-115 417.5 375 60.0
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.7e-114 415.6 328 65.2
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.7e-114 415.6 328 65.2
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.9e-114 415.2 423 52.7
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.4e-114 414.8 351 61.3
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.1e-113 414.1 348 61.2
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.8e-113 413.3 336 64.3
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.4e-113 412.9 348 57.2
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 5.4e-113 411.8 353 62.3
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.2e-112 410.6 359 59.6
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 7.8e-112 407.9 348 60.1
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 3.9e-111 405.6 322 66.5
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 3.9e-111 405.6 344 60.8
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 3.9e-111 405.6 329 64.4
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 3.9e-111 405.6 354 55.4
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.1e-110 404.1 320 65.9
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.1e-110 404.1 335 63.0
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 3.3e-110 402.5 361 58.2
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.6e-109 400.2 361 58.2
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.6e-109 400.2 361 53.5
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.3e-108 396.4 350 58.9
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 3.1e-108 396.0 347 57.1
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 6.8e-108 394.8 349 57.9
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 6.8e-108 394.8 347 57.9
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.5e-107 393.7 311 66.2
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 2.0e-107 393.3 348 58.0
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.0e-107 393.3 348 56.9
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 9.8e-107 391.0 351 57.8
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 2.9e-106 389.4 314 63.7
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.4e-105 387.1 331 62.5
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 3.2e-105 386.0 335 59.4
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 3.2e-105 386.0 347 59.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 7.0e-105 384.8 355 57.2
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.6e-104 383.6 320 61.6
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 2.0e-104 383.3 314 62.1
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.7e-104 382.9 316 61.1
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 7.8e-104 381.3 337 59.3
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.0e-103 380.9 340 52.4
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 2.3e-103 379.8 334 59.6
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 8.6e-103 377.9 314 60.5
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 8.6e-103 377.9 361 56.0
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.1e-102 377.5 326 62.0
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.9e-102 376.7 324 62.7
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.5e-102 374.4 216 75.0
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 3.9e-95 352.4 298 63.8
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 2.5e-94 349.7 417 47.7
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 5.6e-94 348.6 320 60.6
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 1.6e-93 347.1 335 55.5
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 8.1e-93 344.7 242 64.5
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.4e-89 334.0 345 56.5
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 4.1e-89 332.4 266 61.7
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.4e-89 332.0 292 62.0
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 3.5e-88 329.3 336 51.8
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.0e-87 327.8 188 75.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 6.6e-87 325.1 275 57.1
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.5e-86 323.9 332 48.5
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 9.6e-86 321.2 201 66.2
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.2e-85 320.9 298 60.4
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.2e-85 318.5 349 51.6
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.4e-84 317.4 296 58.8
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.2e-84 315.5 317 53.9
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 3.4e-83 312.8 321 47.4
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.4e-83 312.8 189 70.4
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 4.2e-81 305.8 349 49.6
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-79 300.4 323 52.3
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.1e-79 298.9 330 48.8
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 6.6e-79 298.5 361 51.2
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 8.7e-79 298.1 304 50.3
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.1e-78 297.7 320 53.8
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 4.3e-78 295.8 320 52.5
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 9.6e-78 294.7 327 51.1
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.6e-77 293.9 318 53.5
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 2.8e-77 293.1 191 66.0
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 3.6e-77 292.7 325 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 4.8e-77 292.4 316 50.3
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 3.1e-76 289.7 320 52.2
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.5e-75 287.3 318 51.3
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 2.6e-75 286.6 322 50.6
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 7.6e-75 285.0 327 51.4
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.8e-74 282.7 350 45.1
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 3.8e-74 282.7 320 50.0
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 8.4e-74 281.6 324 51.5
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 7.4e-70 268.5 330 49.1
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.7e-61 239.6 180 62.2
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.6e-59 233.4 327 43.1
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 3.4e-59 233.0 217 46.5
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-58 230.7 359 42.3
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.9e-54 217.2 308 44.8
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 2.2e-50 203.8 359 36.2
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.6e-48 196.4 108 79.6
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.1e-47 192.6 156 57.7
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 4.8e-45 186.0 108 76.9
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.1e-40 170.6 93 79.6
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 3.2e-17 93.6 126 36.5
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-13 81.3 38 89.5
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.8e-13 80.5 48 72.9
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 8.6e-10 68.9 83 47.0
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 8.6e-10 68.9 98 49.0
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 1.0e-07 62.0 41 63.4
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 1.0e-07 62.0 41 63.4
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.0e-07 62.0 41 63.4
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 2.3e-07 60.8 45 57.8


User provided reference genes

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