Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 5.2e-60 234.2 119 100.0
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.3e-29 133.3 78 88.5
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 3.6e-16 88.6 73 58.9
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 3.6e-16 88.6 73 60.3
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 3.6e-16 88.6 73 60.3
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 3.6e-16 88.6 73 60.3
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 1.4e-15 86.7 105 47.6
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.8e-15 86.3 96 46.9
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 1.1e-14 83.6 68 51.5
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 1.5e-14 83.2 82 51.2
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.5e-14 83.2 70 57.1
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 1.5e-14 83.2 64 57.8
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 2.0e-14 82.8 68 60.3
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 2.5e-14 82.4 73 57.5
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 2.5e-14 82.4 63 58.7
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 2.5e-14 82.4 64 65.6
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 3.3e-14 82.0 115 39.1
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 3.3e-14 82.0 64 57.8
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 7.4e-14 80.9 70 57.1
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 9.7e-14 80.5 75 52.0
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 1.7e-13 79.7 78 57.7
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 1.7e-13 79.7 64 56.2
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 1.7e-13 79.7 64 56.2
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 2.2e-13 79.3 73 53.4
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 2.2e-13 79.3 74 54.1
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 2.8e-13 79.0 64 54.7
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 2.8e-13 79.0 64 54.7
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 2.8e-13 79.0 64 54.7
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.8e-13 79.0 73 52.1
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 2.8e-13 79.0 65 60.0
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 3.7e-13 78.6 73 53.4
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 3.7e-13 78.6 102 38.2
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 3.7e-13 78.6 61 63.9
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 4.8e-13 78.2 62 58.1
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 6.3e-13 77.8 67 55.2
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 8.2e-13 77.4 76 52.6
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 1.1e-12 77.0 57 68.4
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 1.8e-12 76.3 77 50.6
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 1.8e-12 76.3 91 49.5
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.8e-12 76.3 91 49.5
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.8e-12 76.3 58 62.1
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 2.4e-12 75.9 59 62.7
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 2.4e-12 75.9 65 53.8
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 2.4e-12 75.9 61 63.9
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 2.4e-12 75.9 73 49.3
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 2.4e-12 75.9 57 63.2
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.1e-12 75.5 57 61.4
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.1e-12 75.1 91 48.4
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.1e-12 75.1 91 48.4
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 4.1e-12 75.1 59 61.0
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 5.3e-12 74.7 74 45.9
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 5.3e-12 74.7 63 57.1
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 5.3e-12 74.7 70 54.3
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 6.9e-12 74.3 74 48.6
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 6.9e-12 74.3 94 45.7
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 6.9e-12 74.3 57 64.9
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 6.9e-12 74.3 91 49.5
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 9.1e-12 73.9 69 53.6
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 1.2e-11 73.6 65 53.8
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.2e-11 73.6 60 63.3
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 1.2e-11 73.6 111 40.5
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 1.5e-11 73.2 58 58.6
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 2.0e-11 72.8 63 55.6
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 2.0e-11 72.8 68 54.4
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 2.6e-11 72.4 60 53.3
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 3.4e-11 72.0 61 52.5
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 3.4e-11 72.0 68 48.5
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 3.4e-11 72.0 65 50.8
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 4.5e-11 71.6 73 50.7
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 4.5e-11 71.6 65 52.3
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 5.9e-11 71.2 62 56.5
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 5.9e-11 71.2 62 56.5
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 5.9e-11 71.2 66 50.0
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 5.9e-11 71.2 58 58.6
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 7.7e-11 70.9 59 59.3
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 1.0e-10 70.5 111 40.5
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 1.0e-10 70.5 109 40.4
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 1.3e-10 70.1 58 56.9
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 1.7e-10 69.7 72 50.0
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 2.9e-10 68.9 58 55.2
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 2.9e-10 68.9 58 62.1
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 3.8e-10 68.6 59 59.3
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 3.8e-10 68.6 62 53.2
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 5.0e-10 68.2 58 53.4
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 6.5e-10 67.8 62 50.0
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 6.5e-10 67.8 73 43.8
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.1e-09 67.0 57 54.4
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.1e-09 67.0 60 55.0
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 1.9e-09 66.2 51 56.9
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 2.5e-09 65.9 123 37.4
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 4.2e-09 65.1 65 52.3
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 1.6e-08 63.2 47 55.3
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.7e-08 62.4 66 45.5
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 4.7e-08 61.6 46 54.3
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 6.1e-08 61.2 45 64.4
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 1.8e-07 59.7 64 48.4


User provided reference genes

Program Settings