Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 0.0e+00 1114.8 553 100.0
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 2.3e-166 589.7 584 55.3
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.7e-161 573.5 593 53.5
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.6e-154 549.7 549 52.8
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.6e-154 549.7 582 53.4
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 7.6e-154 548.1 554 53.1
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.7e-153 547.0 534 53.7
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 2.9e-153 546.2 536 53.7
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.1e-152 544.3 537 52.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 4.2e-152 542.3 565 51.7
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.5e-152 542.0 556 51.6
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 7.1e-152 541.6 516 54.8
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 9.3e-152 541.2 529 53.5
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 9.3e-152 541.2 520 55.0
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 2.7e-151 539.7 514 54.9
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 6.0e-151 538.5 525 53.0
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 7.9e-151 538.1 522 53.6
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.3e-150 537.3 529 52.7
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.8e-150 537.0 589 50.1
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.3e-150 536.6 556 51.3
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.9e-149 533.5 546 51.8
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.9e-149 533.5 544 52.4
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.9e-149 533.5 522 53.4
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 2.5e-149 533.1 571 50.8
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 2.5e-149 533.1 564 51.1
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 4.3e-149 532.3 548 51.6
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 7.4e-149 531.6 521 53.4
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.6e-148 530.4 580 50.2
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 4.8e-148 528.9 568 48.9
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 8.2e-148 528.1 525 52.4
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.4e-147 526.6 538 52.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 3.1e-147 526.2 549 52.3
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.1e-147 526.2 498 53.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.4e-146 522.7 533 52.2
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 4.5e-146 522.3 553 51.5
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 7.6e-146 521.5 523 53.5
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 7.6e-146 521.5 541 51.9
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 7.6e-146 521.5 548 50.9
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.0e-145 521.2 508 53.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.3e-145 520.8 511 53.8
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.7e-145 520.4 547 51.2
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.2e-145 520.0 526 52.9
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 3.8e-145 519.2 571 49.7
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.1e-144 517.7 582 50.5
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.4e-144 517.3 493 55.4
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.4e-144 517.3 591 48.7
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.9e-144 516.9 544 51.1
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.5e-144 516.5 582 50.7
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 2.5e-144 516.5 536 51.7
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 3.2e-144 516.2 558 50.7
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.2e-144 515.8 582 50.3
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.1e-144 515.0 525 52.4
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 7.1e-144 515.0 512 52.5
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.6e-143 513.8 602 47.3
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.1e-143 513.5 496 52.8
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.7e-143 513.1 518 52.3
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 3.5e-143 512.7 549 51.2
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.1e-143 511.9 487 54.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 7.9e-143 511.5 519 53.2
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 3.0e-142 509.6 539 49.9
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.1e-141 507.7 507 52.3
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.5e-141 506.5 519 52.2
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 7.4e-141 505.0 499 53.9
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.2e-140 503.4 522 52.1
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.2e-140 503.4 522 52.1
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 6.3e-140 501.9 542 50.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 8.2e-140 501.5 589 47.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.4e-139 500.7 509 51.5
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.1e-139 499.2 521 52.0
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 9.0e-139 498.0 567 48.9
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.2e-138 497.7 545 49.7
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.5e-138 497.3 508 51.8
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.0e-138 496.9 525 51.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 2.6e-138 496.5 571 48.2
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.8e-137 492.7 507 51.9
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 3.8e-137 492.7 518 50.6
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 5.0e-137 492.3 574 49.3
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.4e-136 490.7 524 50.4
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.4e-136 490.7 524 50.4
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.4e-136 490.7 524 50.4
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.9e-136 490.3 498 50.4
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 2.5e-136 490.0 511 50.9
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 2.5e-136 490.0 498 50.8
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 3.2e-136 489.6 498 53.4
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.2e-136 489.6 558 49.3
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 3.2e-136 489.6 483 53.4
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 4.2e-136 489.2 505 51.5
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 9.4e-136 488.0 498 51.0
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.2e-135 487.6 503 51.5
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.6e-135 487.3 497 53.3
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.1e-135 486.9 531 50.8
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 3.6e-135 486.1 497 52.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 4.6e-135 485.7 561 47.6
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 6.1e-135 485.3 561 47.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.5e-133 479.9 496 52.4
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 4.3e-133 479.2 530 49.6
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 5.7e-133 478.8 525 50.1
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 7.4e-133 478.4 516 50.8
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 7.4e-133 478.4 571 48.2
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 7.4e-133 478.4 519 50.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-132 477.6 505 50.9
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.3e-132 477.6 559 47.6
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.1e-131 474.6 506 50.6
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.1e-131 474.6 539 49.0
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 2.4e-131 473.4 497 51.7
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.1e-131 471.5 575 47.1
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.1e-128 464.5 504 50.0
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.4e-128 464.2 582 46.6
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.2e-128 463.0 530 49.6
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.5e-128 462.2 565 47.4
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 9.4e-128 461.5 491 51.1
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 3.6e-127 459.5 482 51.2
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.3e-126 456.8 479 49.9
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.1e-123 446.4 465 50.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 3.5e-122 443.0 560 46.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.5e-122 443.0 458 51.3
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 6.7e-118 428.7 483 48.0
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 2.6e-117 426.8 551 44.5
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.8e-115 420.6 526 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 5.5e-112 409.1 501 45.1
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.2e-112 408.7 441 50.8
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.6e-111 406.4 486 47.3
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.6e-111 406.4 486 47.3
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.3e-108 397.9 515 42.7
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.8e-108 396.7 493 44.6
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.8e-108 396.7 468 47.6
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.4e-107 394.4 449 47.4
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 3.5e-106 389.8 569 42.0
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.2e-103 381.3 427 50.1
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.2e-103 381.3 422 49.5
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.1e-99 368.2 500 45.8
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 5.4e-99 365.9 457 48.8
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.7e-97 360.9 363 51.2
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 8.6e-97 358.6 528 42.8
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 2.2e-84 317.4 260 58.1
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.1e-72 278.5 436 39.4
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 8.4e-68 262.3 532 32.3
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.7e-66 257.3 512 34.4
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.0e-61 241.1 495 33.3
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.3e-56 223.4 348 41.4
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 3.5e-50 203.8 417 31.9
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.5e-48 198.4 296 43.2
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.6e-45 187.6 195 45.6
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.3e-36 158.7 130 56.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 6.3e-23 113.2 168 36.9
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.8e-22 111.7 64 82.8
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 3.8e-20 104.0 64 71.9
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.0e-16 91.7 63 68.3
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-08 65.5 39 71.8


User provided reference genes

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