Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0469 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 2.6e-103 378.6 179 100.0
CDE04G3105 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 4.6e-92 341.3 174 92.5
Gorai.009G108300 Gossypium raimondii HOM05D003714 ORTHO05D004379 1.1e-77 293.5 174 78.2
Migut.N02587 Erythranthe guttata HOM05D003714 ORTHO05D004379 1.9e-77 292.7 175 77.7
DCAR_022764 Daucus carota HOM05D003714 ORTHO05D004379 3.2e-77 292.0 174 77.0
Gohir.D05G104100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 3.2e-77 292.0 174 77.6
Phvul.011G080500 Phaseolus vulgaris HOM05D003714 ORTHO05D004379 3.2e-77 292.0 175 78.3
Manes.11G147100 Manihot esculenta HOM05D003714 ORTHO05D004379 4.2e-77 291.6 175 76.6
Sabra04G0143400 Salix brachista HOM05D003714 ORTHO05D004379 5.4e-77 291.2 175 77.7
VMungo1127G1929 Vigna mungo HOM05D003714 ORTHO05D004379 5.4e-77 291.2 175 77.7
Gohir.A08G199100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 7.1e-77 290.8 174 77.6
Gohir.D08G216500 Gossypium hirsutum HOM05D003714 ORTHO05D004379 9.3e-77 290.4 174 77.6
Gorai.004G230400 Gossypium raimondii HOM05D003714 ORTHO05D004379 9.3e-77 290.4 174 77.6
vmacro03207 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 9.3e-77 290.4 174 76.4
ECA238G0686 Erigeron canadensis HOM05D003714 ORTHO05D004379 1.2e-76 290.0 174 75.3
Gohir.A05G104300 Gossypium hirsutum HOM05D003714 ORTHO05D004379 1.2e-76 290.0 174 77.6
Potri.004G212000 Populus trichocarpa HOM05D003714 ORTHO05D004379 1.2e-76 290.0 175 77.1
Manes.04G019400 Manihot esculenta HOM05D003714 ORTHO05D004379 1.6e-76 289.7 175 76.0
Potri.009G010900 Populus trichocarpa HOM05D003714 ORTHO05D004379 1.6e-76 289.7 175 77.1
Cc01_g10960 Coffea canephora HOM05D003714 ORTHO05D004379 2.7e-76 288.9 174 74.7
MSTRG.18670 Avicennia marina HOM05D003714 ORTHO05D004379 3.5e-76 288.5 173 74.6
CANSAT54G2133 Cannabis sativa HOM05D003714 ORTHO05D004379 3.5e-76 288.5 175 75.4
Ciclev10030090m.g Citrus clementina HOM05D003714 ORTHO05D004379 3.5e-76 288.5 175 76.6
Lalb_Chr01g0004371 Lupinus albus HOM05D003714 ORTHO05D004379 3.5e-76 288.5 175 76.6
Duzib168G1405 Durio zibethinus HOM05D003714 ORTHO05D004379 4.6e-76 288.1 174 77.0
MD11G1138800 Malus domestica HOM05D003714 ORTHO05D004379 4.6e-76 288.1 175 76.0
COL.COLO4_18316 Corchorus olitorius HOM05D003714 ORTHO05D004379 6.0e-76 287.7 174 77.0
Eucgr.B02513 Eucalyptus grandis HOM05D003714 ORTHO05D004379 6.0e-76 287.7 175 76.0
Ca_20855_v3 Cicer arietinum L. HOM05D003714 ORTHO05D004379 7.8e-76 287.3 175 77.1
Prupe.6G103800 Prunus persica HOM05D003714 ORTHO05D004379 7.8e-76 287.3 175 76.0
CSS0039471 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 1.0e-75 287.0 174 76.4
CSS0046644 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 1.0e-75 287.0 174 76.4
MD03G1120400 Malus domestica HOM05D003714 ORTHO05D004379 1.0e-75 287.0 175 75.4
Rhsim13G0095500 Rhododendron simsii HOM05D003714 ORTHO05D004379 1.0e-75 287.0 174 74.1
TWI79G0067 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 1.0e-75 287.0 175 76.0
Duzib150G0819 Durio zibethinus HOM05D003714 ORTHO05D004379 1.3e-75 286.6 174 76.4
Sabra09G0006800 Salix brachista HOM05D003714 ORTHO05D004379 1.3e-75 286.6 175 76.0
Thecc.09G342900 Theobroma cacao HOM05D003714 ORTHO05D004379 1.3e-75 286.6 174 76.4
Actinidia03720 Actinidia chinensis HOM05D003714 ORTHO05D004379 1.7e-75 286.2 174 74.1
Glyma.12G076600 Glycine max HOM05D003714 ORTHO05D004379 1.7e-75 286.2 175 76.0
HanXRQChr14g0452661 Helianthus annuus HOM05D003714 ORTHO05D004379 1.7e-75 286.2 174 74.1
Hma1.2p1_0307F.1_g119810 Hydrangea macrophylla HOM05D003714 ORTHO05D004379 1.7e-75 286.2 174 75.3
Nitab4.5_0001939g0040 Nicotiana tabacum HOM05D003714 ORTHO05D004379 1.7e-75 286.2 174 73.6
SGA_v2.0_scaffold180G39648 Striga asiatica HOM05D003714 ORTHO05D004379 1.7e-75 286.2 174 75.9
QL01p021761 Quercus lobata HOM05D003714 ORTHO05D004379 3.0e-75 285.4 174 75.9
Rhsim01G0215800 Rhododendron simsii HOM05D003714 ORTHO05D004379 3.0e-75 285.4 174 73.6
Glyma.11G145200 Glycine max HOM05D003714 ORTHO05D004379 3.9e-75 285.0 175 76.0
Lsat_1_v5_gn_2_100500 Lactuca sativa HOM05D003714 ORTHO05D004379 3.9e-75 285.0 174 74.1
CAN.G1966.3 Capsicum annuum HOM05D003714 ORTHO05D004379 5.1e-75 284.6 174 73.0
ClCG01G013560 Citrullus lanatus HOM05D003714 ORTHO05D004379 5.1e-75 284.6 174 74.1
FvH4_3g31890 Fragaria vesca HOM05D003714 ORTHO05D004379 5.1e-75 284.6 175 74.9
FAN11G3344 Fragaria x ananassa HOM05D003714 ORTHO05D004379 5.1e-75 284.6 175 74.9
Nn2g10822 Nelumbo nucifera HOM05D003714 ORTHO05D004379 5.1e-75 284.6 175 74.3
RcHm_v2.0_Chr5g0058661 Rosa chinensis HOM05D003714 ORTHO05D004379 5.1e-75 284.6 175 74.9
GSVIVG01025204001 Vitis vinifera HOM05D003714 ORTHO05D004379 5.1e-75 284.6 171 76.6
Atru.chr3.3608 Acer truncatum HOM05D003714 ORTHO05D004379 6.6e-75 284.3 175 75.4
arahy.Tifrunner.gnm1.ann1.8QPZ90 Arachis hypogaea HOM05D003714 ORTHO05D004379 8.7e-75 283.9 175 74.9
CARHR274380 Cardamine hirsuta HOM05D003714 ORTHO05D004379 8.7e-75 283.9 175 75.4
Lalb_Chr03g0027461 Lupinus albus HOM05D003714 ORTHO05D004379 8.7e-75 283.9 175 75.4
Peaxi162Scf00270g00113 Petunia axillaris HOM05D003714 ORTHO05D004379 8.7e-75 283.9 174 73.0
PGR102G2693 Punica granatum HOM05D003714 ORTHO05D004379 8.7e-75 283.9 175 76.0
Ah.01g003010 Amaranthus hybridus HOM05D003714 ORTHO05D004379 1.1e-74 283.5 174 74.1
FAN21G0199 Fragaria x ananassa HOM05D003714 ORTHO05D004379 1.1e-74 283.5 175 74.3
Psat7g144800 Pisum sativum HOM05D003714 ORTHO05D004379 1.1e-74 283.5 175 76.6
THA.LOC104810862 Tarenaya hassleriana HOM05D003714 ORTHO05D004379 1.1e-74 283.5 175 75.4
TPR.G6161 Trifolium pratense HOM05D003714 ORTHO05D004379 1.1e-74 283.5 175 76.0
HPP92_013379 Vanilla planifolia HOM05D003714 ORTHO05D004379 1.1e-74 283.5 176 72.7
CiPaw.13G115700 Carya illinoinensis HOM05D003714 ORTHO05D004379 1.5e-74 283.1 175 76.0
Os02g0806500 Oryza sativa ssp. japonica HOM05D003714 ORTHO05D004379 1.5e-74 283.1 174 73.6
PSO339G1383 Papaver somniferum HOM05D003714 ORTHO05D004379 1.5e-74 283.1 175 73.7
PSO384G2520 Papaver somniferum HOM05D003714 ORTHO05D004379 1.5e-74 283.1 175 73.7
ATR0048G003 Amborella trichopoda HOM05D003714 ORTHO05D004379 1.9e-74 282.7 173 75.1
FAN25G0709 Fragaria x ananassa HOM05D003714 ORTHO05D004379 1.9e-74 282.7 175 74.3
AUR62022789 Chenopodium quinoa HOM05D003714 ORTHO05D004379 2.5e-74 282.3 174 74.7
Lj1A202T36 Lonicera japonica HOM05D003714 ORTHO05D004379 2.5e-74 282.3 174 74.1
MELO3C004898.2 Cucumis melo HOM05D003714 ORTHO05D004379 3.3e-74 282.0 174 73.0
SalBow3G2648 Salvia bowleyana HOM05D003714 ORTHO05D004379 3.3e-74 282.0 174 73.6
TAR633G1536 Trochodendron aralioides HOM05D003714 ORTHO05D004379 3.3e-74 282.0 175 73.7
Haze_23797 Corylus avellana HOM05D003714 ORTHO05D004379 4.3e-74 281.6 175 73.1
Solyc06g075100.3 Solanum lycopersicum HOM05D003714 ORTHO05D004379 4.3e-74 281.6 174 71.8
TWI75G0420 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 4.3e-74 281.6 175 75.4
CsaV3_1G013950 Cucumis sativus L. HOM05D003714 ORTHO05D004379 5.6e-74 281.2 174 73.6
Nitab4.5_0010325g0010 Nicotiana tabacum HOM05D003714 ORTHO05D004379 5.6e-74 281.2 174 71.3
PSO339G1676 Papaver somniferum HOM05D003714 ORTHO05D004379 5.6e-74 281.2 174 74.1
AUR62042199 Chenopodium quinoa HOM05D003714 ORTHO05D004379 7.3e-74 280.8 174 74.7
MBI07_g42224_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 7.3e-74 280.8 174 74.1
Medtr4g058760 Medicago truncatula HOM05D003714 ORTHO05D004379 7.3e-74 280.8 175 75.4
Sopen11g028270 Solanum pennellii HOM05D003714 ORTHO05D004379 7.3e-74 280.8 174 73.6
CAN.G631.39 Capsicum annuum HOM05D003714 ORTHO05D004379 9.6e-74 280.4 174 73.0
Lj3g0004216 Lotus japonicus HOM05D003714 ORTHO05D004379 9.6e-74 280.4 175 74.9
Sopen06g031520 Solanum pennellii HOM05D003714 ORTHO05D004379 9.6e-74 280.4 174 71.8
Zm00001eb258310 Zea mays HOM05D003714 ORTHO05D004379 9.6e-74 280.4 174 74.1
Solyc11g069560.2 Solanum lycopersicum HOM05D003714 ORTHO05D004379 1.3e-73 280.0 174 73.6
EL10Ac9g22541 Beta vulgaris HOM05D003714 ORTHO05D004379 1.6e-73 279.6 173 73.4
Aa31LG1G12660 Aethionema arabicum HOM05D003714 ORTHO05D004379 2.1e-73 279.3 175 73.7
Sc15g0001490 Simmondsia chinensis HOM05D003714 ORTHO05D004379 2.1e-73 279.3 174 73.0
vmacro14427 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 2.1e-73 279.3 174 73.0
Haze_23798 Corylus avellana HOM05D003714 ORTHO05D004379 2.8e-73 278.9 175 72.6
Thhalv10012601m.g Eutrema salsugineum HOM05D003714 ORTHO05D004379 2.8e-73 278.9 175 74.3
Sed0011730 Sechium edule HOM05D003714 ORTHO05D004379 2.8e-73 278.9 174 73.6
AL8G37290 Arabidopsis lyrata HOM05D003714 ORTHO05D004379 3.6e-73 278.5 175 73.1
AT5G60700 Arabidopsis thaliana HOM05D003714 ORTHO05D004379 3.6e-73 278.5 175 73.1
Carub.0008s2138 Capsella rubella HOM05D003714 ORTHO05D004379 3.6e-73 278.5 175 73.1
unitig_8.g3299 Utricularia gibba HOM05D003714 ORTHO05D004379 4.8e-73 278.1 176 71.0
BcaC03g13945 Brassica carinata HOM05D003714 ORTHO05D004379 6.2e-73 277.7 175 73.7
C02p11520 Brassica napus HOM05D003714 ORTHO05D004379 6.2e-73 277.7 175 73.7
BraA02t05710Z Brassica rapa HOM05D003714 ORTHO05D004379 6.2e-73 277.7 175 73.7
FAN16G2552 Fragaria x ananassa HOM05D003714 ORTHO05D004379 6.2e-73 277.7 175 73.7
PSO063G6987 Papaver somniferum HOM05D003714 ORTHO05D004379 6.2e-73 277.7 174 73.0
BolC2t07227H Brassica oleracea HOM05D003714 ORTHO05D004379 8.1e-73 277.3 175 73.7
BraA10t43869Z Brassica rapa HOM05D003714 ORTHO05D004379 1.1e-72 276.9 175 73.7
BcaC04g19732 Brassica carinata HOM05D003714 ORTHO05D004379 1.4e-72 276.6 175 73.1
A10p17940 Brassica napus HOM05D003714 ORTHO05D004379 1.4e-72 276.6 175 73.1
C09p53430 Brassica napus HOM05D003714 ORTHO05D004379 1.4e-72 276.6 175 73.1
BolC9t58217H Brassica oleracea HOM05D003714 ORTHO05D004379 1.4e-72 276.6 175 73.1
Oeu001285.1 Olea europaea HOM05D003714 ORTHO05D004379 1.8e-72 276.2 166 75.9
Sp6g22270 Schrenkiella parvula HOM05D003714 ORTHO05D004379 1.8e-72 276.2 175 73.1
Actinidia07147 Actinidia chinensis HOM05D003714 ORTHO05D004379 2.4e-72 275.8 174 71.8
Gohir.A03G032400 Gossypium hirsutum HOM05D003714 ORTHO05D004379 2.4e-72 275.8 173 74.6
MBI10_g19605_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 3.1e-72 275.4 174 73.0
BcaB08g36372 Brassica carinata HOM05D003714 ORTHO05D004379 4.0e-72 275.0 175 73.1
SGA_v2.0_scaffold116G32255 Striga asiatica HOM05D003714 ORTHO05D004379 4.0e-72 275.0 174 72.4
Aqoxy1G01219 Aquilegia oxysepala HOM05D003714 ORTHO05D004379 5.3e-72 274.6 175 72.6
SEGI_02314 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 5.3e-72 274.6 174 70.7
SEGI_21871 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 5.3e-72 274.6 174 70.7
unitig_27.g25054 Utricularia gibba HOM05D003714 ORTHO05D004379 6.9e-72 274.2 174 70.1
Gohir.D03G136000 Gossypium hirsutum HOM05D003714 ORTHO05D004379 9.0e-72 273.9 173 74.0
Gorai.003G143100 Gossypium raimondii HOM05D003714 ORTHO05D004379 9.0e-72 273.9 173 74.0
BcaB05g22662 Brassica carinata HOM05D003714 ORTHO05D004379 3.4e-71 271.9 175 72.6
Peaxi162Scf00029g01511 Petunia axillaris HOM05D003714 ORTHO05D004379 4.5e-71 271.6 174 67.8
CDE07G1448 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 5.8e-71 271.2 174 70.1
DCAR_018798 Daucus carota HOM05D003714 ORTHO05D004379 3.8e-70 268.5 170 71.8
Lj3g0001899 Lotus japonicus HOM05D003714 ORTHO05D004379 8.4e-70 267.3 175 71.4
SMO165G0075 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 8.4e-70 267.3 174 68.4
Nitab4.5_0000106g0250 Nicotiana tabacum HOM05D003714 ORTHO05D004379 2.4e-69 265.8 174 67.8
SEGI_28974 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 3.2e-69 265.4 174 67.2
SEGI_03824 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 7.1e-69 264.2 172 68.0
SMO118G0436 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 4.6e-68 261.5 174 69.5
Lj2C1024T6 Lonicera japonica HOM05D003714 ORTHO05D004379 1.1e-66 256.9 174 69.0
Pp3c3_14800 Physcomitrium patens HOM05D003714 ORTHO05D004379 5.6e-66 254.6 174 68.4
Mapoly0151s0026 Marchantia polymorpha HOM05D003714 ORTHO05D004379 2.1e-65 252.7 174 64.9
Pp3c4_16750 Physcomitrium patens HOM05D003714 ORTHO05D004379 2.1e-65 252.7 174 66.7
Pp3c3_5960 Physcomitrium patens HOM05D003714 ORTHO05D004379 1.4e-64 250.0 174 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2800 Anthoceros agrestis HOM05D003714 ORTHO05D004379 2.8e-57 225.7 174 59.8
unitig_8.g3004 Utricularia gibba HOM05D003714 ORTHO05D004379 1.1e-56 223.8 175 58.3
Dinv32729 Davidia involucrata HOM05D003714 ORTHO05D004379 2.4e-56 222.6 125 80.0
AagrBONN_evm.TU.Sc2ySwM_368.1662 Anthoceros agrestis HOM05D003714 ORTHO05D004379 6.9e-56 221.1 174 57.5
Migut.D02239 Erythranthe guttata HOM05D003714 ORTHO05D004379 1.1e-48 197.2 174 56.9
C07p08060 Brassica napus HOM05D003714 ORTHO05D004379 5.7e-42 174.9 152 59.2
BolC7t41224H Brassica oleracea HOM05D003714 ORTHO05D004379 5.7e-42 174.9 152 59.2
BcaC06g36081 Brassica carinata HOM05D003714 ORTHO05D004379 8.2e-41 171.0 152 58.6
PGSC0003DMG400008087 Solanum tuberosum HOM05D003714 ORTHO05D004379 5.3e-40 168.3 93 79.6
HPP92_025357 Vanilla planifolia HOM05D003714 ORTHO05D004379 1.5e-29 133.7 96 64.6
BraA03t15005Z Brassica rapa HOM05D003714 ORTHO05D004379 1.1e-26 124.0 104 60.6
BcaC04g20013 Brassica carinata HOM05D003714 ORTHO05D004379 7.4e-26 121.3 97 62.9
BolC6t37008H Brassica oleracea HOM05D003714 ORTHO05D004379 1.3e-25 120.6 97 60.8
C06p18020 Brassica napus HOM05D003714 ORTHO05D004379 1.7e-25 120.2 97 61.9
BcaC02g10354 Brassica carinata HOM05D003714 ORTHO05D004379 2.2e-25 119.8 97 60.8
BraA08t33776Z Brassica rapa HOM05D003714 ORTHO05D004379 8.2e-25 117.9 97 61.9
Actinidia24112 Actinidia chinensis HOM05D000450 ORTHO05D000327 1.4e-24 117.1 91 62.6
C03p42240 Brassica napus HOM05D003714 ORTHO05D004379 1.4e-24 117.1 92 63.0
BcaC08g44367 Brassica carinata HOM05D003714 ORTHO05D004379 5.3e-24 115.2 97 59.8
BcaC07g41150 Brassica carinata HOM05D003714 ORTHO05D004379 1.2e-23 114.0 97 59.8
C08p41470 Brassica napus HOM05D003714 ORTHO05D004379 1.2e-23 114.0 97 59.8
BolC8t51708H Brassica oleracea HOM05D003714 ORTHO05D004379 1.2e-23 114.0 97 59.8
C09p48800 Brassica napus HOM05D000129 ORTHO05D000144 3.5e-23 112.5 89 61.8
BolC9t57727H Brassica oleracea HOM05D000129 ORTHO05D000144 3.5e-23 112.5 89 61.8
CBR_g21817 Chara braunii HOM05D003714 ORTHO05D004379 1.7e-22 110.2 153 39.9
HPP92_025358 Vanilla planifolia HOM05D003714 ORTHO05D004379 1.8e-08 63.5 52 50.0
Actinidia13049 Actinidia chinensis HOM05D003714 ORTHO05D004379 3.5e-07 59.3 37 64.9
ECA240G3817 Erigeron canadensis HOM05D004906 ORTHO05D005926 1.0e-06 57.8 86 34.9
Atru.chr12.1308 Acer truncatum HOM05D004906 ORTHO05D005926 2.3e-06 56.6 86 31.4
BcaB01g05413 Brassica carinata HOM05D004906 ORTHO05D005926 8.6e-06 54.7 86 29.1


User provided reference genes

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