Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 0.0e+00 2370.9 1200 100.0
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.3e-203 714.5 1267 39.2
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.5e-194 684.5 1283 36.2
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 2.0e-191 674.1 1294 37.2
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 7.1e-189 665.6 1309 36.2
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 1.8e-187 661.0 1296 36.2
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 3.3e-186 656.8 1288 36.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 5.6e-186 656.0 1240 37.2
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.1e-185 654.1 1329 35.1
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.1e-185 654.1 1322 35.4
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 4.0e-184 649.8 1324 35.3
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 5.3e-184 649.4 1268 37.9
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.5e-183 647.9 1329 34.9
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.5e-183 647.9 1350 34.9
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.0e-183 647.5 1303 36.1
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 2.6e-183 647.1 1298 36.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 2.6e-183 647.1 1300 35.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 1.1e-181 641.7 1324 35.2
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.1e-181 641.7 1298 34.7
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 1.6e-180 637.9 1267 35.4
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 1.6e-180 637.9 1232 36.8
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 6.0e-180 636.0 1299 36.7
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 8.7e-179 632.1 1229 36.3
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.5e-178 630.6 1246 35.8
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 3.3e-178 630.2 1302 35.3
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 1.4e-176 624.8 1256 35.6
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 3.8e-174 616.7 1206 36.1
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 8.4e-174 615.5 1255 35.5
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.4e-173 614.8 1240 34.8
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 1.9e-173 614.4 1271 35.2
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 8.7e-171 605.5 1189 35.6
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 2.5e-170 604.0 1272 34.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 5.7e-170 602.8 1293 34.2
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 4.8e-169 599.7 1159 35.5
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.4e-168 598.2 1269 35.5
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 3.1e-168 597.0 1252 35.1
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 7.6e-167 592.4 1371 32.5
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.0e-166 592.0 1251 34.5
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.0e-166 589.7 1302 35.0
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 8.5e-166 589.0 1271 34.8
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 1.4e-165 588.2 1264 33.9
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.2e-165 585.9 1273 35.1
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 2.1e-164 584.3 1251 34.8
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 2.1e-164 584.3 1303 34.8
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 2.1e-164 584.3 1261 35.0
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 6.1e-164 582.8 1156 35.6
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 1.3e-163 581.6 1219 33.6
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 3.0e-163 580.5 1217 34.2
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.1e-160 570.5 1259 33.5
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 5.3e-160 569.7 1252 33.4
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 5.9e-159 566.2 1268 33.9
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.2e-157 560.5 1253 33.8
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 7.9e-156 555.8 1285 33.2
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 4.4e-154 550.1 1260 32.8
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 9.7e-154 548.9 1289 33.7
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 2.8e-153 547.4 1256 33.4
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 8.2e-153 545.8 1247 32.6
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 2.0e-151 541.2 1227 34.2
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 2.2e-150 537.7 1183 33.8
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.9e-150 537.3 1242 32.5
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 2.5e-149 534.3 1312 32.1
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 9.4e-149 532.3 1255 32.0
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 3.9e-147 526.9 1207 33.4
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.1e-146 525.4 1170 33.0
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.6e-146 524.2 1258 32.1
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 4.4e-146 523.5 1255 32.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 7.4e-146 522.7 1294 32.1
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 9.7e-146 522.3 1216 33.4
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 1.3e-145 521.9 1244 31.6
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.2e-145 521.2 1231 32.4
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 8.2e-145 519.2 1237 32.2
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 4.1e-144 516.9 1262 31.2
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.6e-143 515.0 1197 32.4
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.0e-142 512.3 1288 32.3
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.3e-142 511.9 1221 31.8
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.9e-141 508.1 1247 32.3
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 8.0e-140 502.7 1270 31.2
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 4.0e-139 500.4 1196 32.8
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 8.2e-137 492.7 1166 33.4
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 2.9e-134 484.2 1025 34.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.6e-132 478.4 1191 31.4
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 8.6e-126 456.1 1259 29.1
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.1e-125 455.7 1215 31.0
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.2e-125 453.8 1180 30.6
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 4.7e-124 450.3 1190 30.8
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 4.9e-121 440.3 984 32.5
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 7.8e-119 433.0 1092 31.7
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.7e-118 431.8 805 34.5
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 3.8e-118 430.6 1296 29.2
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 6.4e-113 413.3 1048 31.2
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.1e-112 412.5 692 40.2
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 7.8e-103 379.8 687 38.0
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 5.0e-102 377.1 636 37.9
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 2.5e-93 348.2 680 35.9
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 6.0e-87 327.0 688 36.3
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.8e-83 315.5 807 29.2
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 5.2e-83 313.9 691 34.7
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.5e-82 312.4 526 38.8
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 7.8e-79 300.1 559 36.1
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.5e-77 295.0 765 30.8
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.1e-75 288.1 785 27.4
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 5.8e-74 283.9 772 32.4
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.8e-70 272.3 707 32.4
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 8.1e-68 263.5 556 35.3
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.8e-67 262.3 290 45.9
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 6.7e-62 243.8 647 30.6
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.3e-61 241.1 307 42.7
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.1e-55 222.2 382 33.0
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 6.0e-55 220.7 711 30.5
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.8e-52 211.1 598 33.8
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 5.3e-51 207.6 754 25.6
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.2e-31 143.3 355 30.1
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 8.0e-31 140.6 166 45.2
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 2.7e-18 99.0 481 26.2
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 8.5e-17 94.0 252 28.6
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.0e-14 85.5 358 22.6
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.5e-13 83.2 158 30.4
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.3e-12 80.1 462 26.4
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.4e-11 76.6 115 40.9
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.3e-09 69.3 141 30.5
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.9e-09 68.9 122 35.2
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.8e-09 68.6 479 24.4
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 3.3e-08 65.5 105 40.0
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 4.2e-08 65.1 147 31.3
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 7.2e-08 64.3 161 32.3
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 1.8e-06 59.7 470 24.5


User provided reference genes

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