Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.9e-198 695.7 357 100.0
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.1e-84 317.8 323 55.4
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 4.5e-83 312.4 322 55.3
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.7e-78 295.4 317 53.9
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 1.3e-77 294.3 291 57.0
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 2.2e-77 293.5 318 53.5
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 3.7e-77 292.7 314 53.5
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.4e-76 290.8 277 59.6
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.8e-76 290.4 323 53.3
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 2.4e-76 290.0 323 53.3
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 3.2e-76 289.7 275 55.3
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 9.2e-76 288.1 319 51.4
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.5e-75 286.2 320 50.9
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 7.8e-75 285.0 311 55.9
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 1.7e-74 283.9 315 51.7
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 2.3e-74 283.5 308 54.2
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 3.0e-74 283.1 283 55.8
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 6.6e-74 282.0 321 53.9
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.1e-73 281.2 323 52.3
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 1.5e-73 280.8 286 54.9
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 4.3e-73 279.3 287 55.4
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 1.2e-72 277.7 287 55.1
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 1.2e-72 277.7 321 49.2
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.2e-72 277.7 273 56.8
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 1.6e-72 277.3 274 55.8
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 4.7e-72 275.8 279 55.9
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 6.2e-72 275.4 282 56.7
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.0e-71 274.6 311 52.4
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 2.3e-71 273.5 318 52.5
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 4.0e-71 272.7 279 55.9
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 5.2e-71 272.3 311 52.7
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 6.8e-71 271.9 317 50.8
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 6.8e-71 271.9 281 55.5
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 8.9e-71 271.6 313 53.7
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 1.2e-70 271.2 313 52.7
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.2e-70 271.2 316 50.6
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 2.6e-70 270.0 315 51.1
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 5.8e-70 268.9 273 58.2
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 5.8e-70 268.9 273 58.2
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 7.5e-70 268.5 312 51.3
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 9.8e-70 268.1 314 53.2
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.7e-69 267.3 278 55.0
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.7e-69 266.2 337 49.3
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.9e-68 263.8 308 50.6
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.9e-68 263.8 273 57.5
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.1e-68 262.7 263 56.7
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 7.0e-68 261.9 263 56.7
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 9.2e-68 261.5 279 50.9
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.2e-67 261.2 315 50.2
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.6e-67 260.8 312 49.7
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 3.5e-67 259.6 279 51.3
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 3.5e-67 259.6 312 49.0
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 6.0e-67 258.8 317 52.1
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 1.0e-66 258.1 312 51.6
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.3e-66 257.7 279 51.6
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.7e-66 257.3 293 50.9
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.0e-66 256.5 342 47.1
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 6.6e-66 255.4 354 45.5
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 1.9e-65 253.8 290 50.7
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 4.3e-65 252.7 279 52.0
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 9.5e-65 251.5 312 51.3
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 1.6e-64 250.8 289 50.5
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 2.1e-64 250.4 272 51.5
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 2.1e-64 250.4 282 52.8
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 4.7e-64 249.2 285 50.9
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 8.1e-64 248.4 342 48.5
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 8.1e-64 248.4 256 54.7
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 1.4e-63 247.7 312 49.0
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 1.8e-63 247.3 288 49.3
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 2.3e-63 246.9 279 49.8
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 2.3e-63 246.9 280 50.0
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 3.1e-63 246.5 256 53.9
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 3.1e-63 246.5 288 52.4
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 1.5e-62 244.2 280 50.4
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 2.2e-61 240.4 291 51.2
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 2.2e-61 240.4 291 51.2
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 2.2e-61 240.4 280 50.7
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 2.9e-61 240.0 308 48.4
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 4.9e-61 239.2 249 53.4
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 8.3e-61 238.4 274 52.6
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 8.3e-61 238.4 246 52.8
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 8.3e-61 238.4 282 50.0
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 1.1e-60 238.0 265 50.2
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.4e-60 237.7 280 50.4
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.9e-60 237.3 272 51.8
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 2.4e-60 236.9 284 50.4
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.4e-60 236.9 274 50.4
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 4.1e-60 236.1 291 50.9
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 4.1e-60 236.1 279 49.5
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 5.4e-60 235.7 244 54.5
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 7.1e-60 235.3 291 50.5
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 7.1e-60 235.3 291 50.5
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.2e-59 234.6 291 49.5
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 2.1e-59 233.8 273 51.3
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.1e-59 233.8 280 48.9
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.7e-59 233.4 270 49.6
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 3.5e-59 233.0 262 50.8
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 4.6e-59 232.6 291 50.9
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 6.0e-59 232.3 275 51.3
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.3e-58 231.1 293 47.8
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.7e-58 230.7 275 50.5
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 3.0e-58 229.9 282 48.9
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 3.0e-58 229.9 270 46.7
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 5.1e-58 229.2 282 49.6
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 8.6e-58 228.4 271 49.1
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 1.5e-57 227.6 297 48.5
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.5e-57 226.9 290 49.0
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.3e-57 226.5 291 47.1
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 4.3e-57 226.1 284 47.5
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 5.6e-57 225.7 279 48.4
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 9.5e-57 224.9 275 49.8
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 9.5e-57 224.9 239 52.3
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.2e-56 224.6 254 48.8
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 2.1e-56 223.8 277 47.3
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 2.8e-56 223.4 284 47.2
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 2.8e-56 223.4 284 47.2
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 4.7e-56 222.6 229 54.6
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 8.1e-56 221.9 283 46.6
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 1.1e-55 221.5 278 47.5
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 1.4e-55 221.1 283 47.0
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 2.3e-55 220.3 423 36.4
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.7e-53 214.2 274 46.4
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.2e-53 213.8 277 46.6
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.9e-53 213.4 226 51.3
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 8.4e-53 211.8 272 46.7
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 7.1e-52 208.8 294 44.6
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 1.5e-46 191.0 224 49.1
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 2.6e-46 190.3 215 49.8
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.4e-44 184.5 219 48.9
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.2e-44 183.3 162 54.9
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 8.7e-42 175.3 264 41.3
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 3.1e-39 166.8 307 38.1
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.2e-38 164.9 180 50.6
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 5.1e-34 149.4 236 41.1
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 7.4e-33 145.6 128 57.8
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.4e-30 136.7 124 56.5
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 5.8e-30 136.0 127 56.7
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.2e-27 128.3 181 45.3
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 2.5e-25 120.6 152 47.4
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 5.3e-23 112.8 149 45.6
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 9.0e-23 112.1 167 41.3
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.8e-18 97.8 84 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 1.6e-16 91.3 104 47.1
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 4.1e-15 86.7 42 97.6
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 7.4e-09 65.9 179 35.2
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 1.4e-07 61.6 279 26.9


User provided reference genes

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