Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 1.2e-70 269.6 132 100.0
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.5e-18 95.9 101 44.6
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 7.2e-18 94.4 109 41.3
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.6e-17 93.2 91 45.1
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.6e-17 93.2 91 45.1
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 2.7e-17 92.4 88 45.5
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.6e-17 92.0 102 45.1
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.0e-16 90.5 89 48.3
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.3e-16 89.4 99 42.4
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 3.0e-16 89.0 104 40.4
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 5.2e-16 88.2 86 44.2
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 5.2e-16 88.2 104 36.5
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.7e-16 87.8 85 45.9
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 2.6e-15 85.9 131 34.4
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 3.3e-15 85.5 117 37.6
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 3.3e-15 85.5 90 44.4
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.3e-14 83.6 101 42.6
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.3e-14 83.6 101 37.6
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 2.2e-14 82.8 101 38.6
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 6.3e-14 81.3 87 40.2
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 8.2e-14 80.9 85 43.5
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 8.2e-14 80.9 101 34.7
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 1.8e-13 79.7 87 42.5
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 1.8e-13 79.7 93 39.8
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.4e-13 79.3 85 40.0
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 3.1e-13 79.0 104 39.4
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.1e-13 79.0 104 39.4
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 5.3e-13 78.2 106 35.8
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 7.0e-13 77.8 87 43.7
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 9.1e-13 77.4 87 39.1
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 9.1e-13 77.4 108 39.8
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.2e-12 77.0 99 37.4
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-12 77.0 105 35.2
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.6e-12 76.6 105 36.2
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.6e-12 76.6 120 32.5
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.0e-12 76.3 104 38.5
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 2.0e-12 76.3 107 37.4
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.6e-12 75.9 106 37.7
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 2.6e-12 75.9 104 37.5
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 2.6e-12 75.9 74 45.9
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 3.5e-12 75.5 109 35.8
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 4.5e-12 75.1 122 31.1
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.5e-12 75.1 115 38.3
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 4.5e-12 75.1 102 37.3
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 5.9e-12 74.7 106 37.7
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.9e-12 74.7 93 35.5
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.9e-12 74.7 83 43.4
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.9e-12 74.7 83 43.4
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 7.7e-12 74.3 122 31.1
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.7e-12 74.3 105 36.2
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.7e-12 74.3 102 37.3
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 1.3e-11 73.6 133 30.1
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.7e-11 73.2 106 37.7
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 2.2e-11 72.8 105 33.3
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.8e-11 72.0 86 39.5
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.8e-11 72.0 115 31.3
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.8e-11 72.0 86 40.7
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 5.0e-11 71.6 101 39.6
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 5.0e-11 71.6 82 37.8
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 6.5e-11 71.2 89 37.1
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 8.5e-11 70.9 68 44.1
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 8.5e-11 70.9 125 33.6
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 1.1e-10 70.5 85 38.8
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 1.1e-10 70.5 88 38.6
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-10 70.5 103 35.0
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.1e-10 70.5 125 33.6
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.1e-10 70.5 124 33.1
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.5e-10 70.1 107 37.4
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.5e-10 70.1 116 30.2
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 1.5e-10 70.1 104 34.6
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 1.5e-10 70.1 90 38.9
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.5e-10 69.3 81 43.2
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 2.5e-10 69.3 118 32.2
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 2.5e-10 69.3 121 34.7
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 2.5e-10 69.3 94 36.2
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 3.2e-10 68.9 99 37.4
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 3.2e-10 68.9 87 37.9
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 4.2e-10 68.6 103 35.9
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 4.2e-10 68.6 102 33.3
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 4.2e-10 68.6 101 36.6
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 5.5e-10 68.2 95 36.8
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 5.5e-10 68.2 115 32.2
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 7.2e-10 67.8 95 37.9
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 7.2e-10 67.8 109 34.9
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 9.4e-10 67.4 104 36.5
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.6e-09 66.6 93 35.5
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.1e-09 66.2 127 33.9
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 2.1e-09 66.2 105 28.6
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 3.6e-09 65.5 132 28.8
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 3.6e-09 65.5 103 32.0
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.7e-09 65.1 98 34.7
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.7e-09 65.1 110 33.6
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.7e-09 65.1 101 31.7
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 6.1e-09 64.7 95 35.8
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 6.1e-09 64.7 102 35.3
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.0e-08 63.9 86 36.0
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-08 63.5 89 39.3
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.8e-08 63.2 97 36.1
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.8e-08 63.2 99 30.3
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 1.8e-08 63.2 86 36.0
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 3.0e-08 62.4 64 37.5
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 3.0e-08 62.4 90 33.3
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.0e-08 62.4 110 35.5
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 4.0e-08 62.0 94 35.1
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 4.0e-08 62.0 69 42.0
COL.COLO4_21442 Corchorus olitorius HOM05D012915 ORTHO05D012666 4.0e-08 62.0 89 29.2
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.7e-08 61.2 86 34.9
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 8.8e-08 60.8 94 35.1
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.8e-08 60.8 76 43.4
TPR.G10176 Trifolium pratense HOM05D000395 ORTHO05D000088 2.0e-07 59.7 104 35.6
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 3.3e-07 58.9 65 44.6
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 3.3e-07 58.9 97 34.0
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 3.3e-07 58.9 104 27.9
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 3.3e-07 58.9 100 37.0
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 4.4e-07 58.5 94 34.0
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.4e-07 58.5 85 34.1
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.4e-07 58.5 128 29.7
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 4.4e-07 58.5 128 29.7
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.7e-07 58.2 114 34.2
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 5.7e-07 58.2 88 35.2
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 7.5e-07 57.8 109 31.2
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.5e-07 57.8 89 33.7
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.5e-07 57.8 89 33.7
Medtr1g108780 Medicago truncatula HOM05D000395 ORTHO05D000088 9.7e-07 57.4 94 35.1
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 1.3e-06 57.0 64 35.9
COL.COLO4_05305 Corchorus olitorius HOM05D012915 ORTHO05D012666 1.3e-06 57.0 89 28.1
Nitab4.5_0001401g0160 Nicotiana tabacum HOM05D000395 ORTHO05D000088 1.3e-06 57.0 109 33.0
PGSC0003DMG400035388 Solanum tuberosum HOM05D000395 ORTHO05D000088 1.3e-06 57.0 91 33.0
Ah.11g043200 Amaranthus hybridus HOM05D000823 ORTHO05D000088 1.7e-06 56.6 84 34.5
TPR.G14727 Trifolium pratense HOM05D000395 ORTHO05D000088 1.7e-06 56.6 101 33.7
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.7e-06 56.6 124 29.8
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 2.2e-06 56.2 98 35.7
AUR62033880 Chenopodium quinoa HOM05D000823 ORTHO05D000088 2.8e-06 55.8 128 26.6
Eucgr.H02901 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.8e-06 55.8 97 28.9
Medtr3g061300 Medicago truncatula HOM05D000395 ORTHO05D000088 2.8e-06 55.8 103 31.1
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.8e-06 55.8 68 38.2
SEGI_12498 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.8e-06 55.8 93 34.4
Duzib248G0282 Durio zibethinus HOM05D000823 ORTHO05D009132 3.7e-06 55.5 81 35.8
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 3.7e-06 55.5 88 36.4
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.7e-06 55.5 109 30.3
Sc15g0006570 Simmondsia chinensis HOM05D000823 ORTHO05D000088 4.8e-06 55.1 90 31.1
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.8e-06 55.1 70 38.6
EL10Ac1g01749 Beta vulgaris HOM05D000823 ORTHO05D000088 8.2e-06 54.3 99 32.3
Eucgr.I01211 Eucalyptus grandis HOM05D000395 ORTHO05D000088 8.2e-06 54.3 116 29.3
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 8.2e-06 54.3 61 42.6
Gohir.D02G212900 Gossypium hirsutum HOM05D007600 ORTHO05D009132 8.2e-06 54.3 95 29.5
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 8.2e-06 54.3 87 32.2


User provided reference genes

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