Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0368 Ceratophyllum demersum HOM05D000599 ORTHO05D006883 2.8e-52 208.4 107 100.0
vmacro11900 Vaccinium macrocarpon HOM05D000599 ORTHO05D006883 7.9e-15 84.0 63 68.3
TWI38G1662 Tripterygium wilfordii HOM05D000599 ORTHO05D006883 1.0e-14 83.6 64 64.1
MBI06_g45594_MAGBIO Magnolia biondii HOM05D000599 ORTHO05D006883 1.8e-14 82.8 58 69.0
MD11G1257100 Malus domestica HOM05D000599 ORTHO05D006883 1.8e-14 82.8 65 61.5
Nn1g04277 Nelumbo nucifera HOM05D000599 ORTHO05D006883 1.8e-14 82.8 59 69.5
TAR627G0901 Trochodendron aralioides HOM05D000599 ORTHO05D006883 1.8e-14 82.8 59 67.8
PSO832G3682 Papaver somniferum HOM05D000599 ORTHO05D006883 2.3e-14 82.4 65 64.6
Rhsim06G0203600 Rhododendron simsii HOM05D000599 ORTHO05D006883 3.9e-14 81.6 64 62.5
Prupe.4G173000 Prunus persica HOM05D000599 ORTHO05D006883 5.1e-14 81.3 65 63.1
PSO210G4318 Papaver somniferum HOM05D000599 ORTHO05D006883 6.7e-14 80.9 64 64.1
Actinidia12546 Actinidia chinensis HOM05D000599 ORTHO05D006883 1.5e-13 79.7 64 60.9
CSS0008026 Camellia sinensis var. sinensis HOM05D000599 ORTHO05D006883 1.5e-13 79.7 54 70.4
CSS0043173 Camellia sinensis var. sinensis HOM05D000599 ORTHO05D006883 1.5e-13 79.7 54 70.4
FvH4_3g19130 Fragaria vesca HOM05D000599 ORTHO05D006883 1.5e-13 79.7 58 67.2
FAN11G3855 Fragaria x ananassa HOM05D000599 ORTHO05D006883 1.5e-13 79.7 58 67.2
FAN16G1937 Fragaria x ananassa HOM05D000599 ORTHO05D006883 1.5e-13 79.7 58 67.2
FAN21G2449 Fragaria x ananassa HOM05D000599 ORTHO05D006883 1.5e-13 79.7 58 67.2
FAN25G3373 Fragaria x ananassa HOM05D000599 ORTHO05D006883 1.5e-13 79.7 58 67.2
ATR0602G106 Amborella trichopoda HOM05D000599 ORTHO05D006883 1.9e-13 79.3 57 68.4
Cfa020625 Carpinus fangiana HOM05D000599 ORTHO05D006883 1.9e-13 79.3 55 69.1
CiPaw.11G166300 Carya illinoinensis HOM05D000599 ORTHO05D006883 1.9e-13 79.3 55 70.9
Haze_09378 Corylus avellana HOM05D000599 ORTHO05D006883 1.9e-13 79.3 55 69.1
RcHm_v2.0_Chr5g0031981 Rosa chinensis HOM05D000599 ORTHO05D006883 1.9e-13 79.3 57 68.4
Dinv20217 Davidia involucrata HOM05D000599 ORTHO05D006883 3.3e-13 78.6 64 62.5
MD03G1236200 Malus domestica HOM05D000599 ORTHO05D006883 3.3e-13 78.6 65 61.5
Potri.001G373200 Populus trichocarpa HOM05D000599 ORTHO05D006883 3.3e-13 78.6 58 69.0
QL08p023388 Quercus lobata HOM05D000599 ORTHO05D006883 3.3e-13 78.6 55 69.1
Ciclev10008721m.g Citrus clementina HOM05D000599 ORTHO05D006883 5.6e-13 77.8 51 72.5
Cc05_g11570 Coffea canephora HOM05D000599 ORTHO05D006883 5.6e-13 77.8 67 59.7
Sed0014270 Sechium edule HOM05D000599 ORTHO05D006883 5.6e-13 77.8 55 67.3
BcaC01g03893 Brassica carinata HOM05D000599 ORTHO05D006883 7.4e-13 77.4 65 56.9
AUR62036135 Chenopodium quinoa HOM05D000599 ORTHO05D006883 7.4e-13 77.4 53 67.9
Zm00001eb152950 Zea mays HOM05D000599 ORTHO05D006883 7.4e-13 77.4 48 77.1
A05p34360 Brassica napus HOM05D000599 ORTHO05D006883 9.6e-13 77.0 53 67.9
Lj1A836G33 Lonicera japonica HOM05D000599 ORTHO05D006883 9.6e-13 77.0 65 58.5
BcaB06g29534 Brassica carinata HOM05D000599 ORTHO05D006883 1.3e-12 76.6 53 66.0
C05p52130 Brassica napus HOM05D000599 ORTHO05D006883 1.3e-12 76.6 53 66.0
BolC5t33898H Brassica oleracea HOM05D000599 ORTHO05D006883 1.3e-12 76.6 53 66.0
MELO3C019391.2 Cucumis melo HOM05D000599 ORTHO05D006883 1.6e-12 76.3 73 54.8
Lsat_1_v5_gn_5_128780 Lactuca sativa HOM05D000599 ORTHO05D006883 1.6e-12 76.3 55 63.6
BraA05t22256Z Brassica rapa HOM05D000599 ORTHO05D006883 2.1e-12 75.9 53 66.0
Migut.M00767 Erythranthe guttata HOM05D000599 ORTHO05D006883 2.1e-12 75.9 53 67.9
Oeu025350.3 Olea europaea HOM05D000599 ORTHO05D006883 2.1e-12 75.9 53 64.2
PGR083G0548 Punica granatum HOM05D000599 ORTHO05D006883 2.1e-12 75.9 60 60.0
THA.LOC104810454 Tarenaya hassleriana HOM05D000599 ORTHO05D006883 2.1e-12 75.9 62 62.9
BcaC01g03898 Brassica carinata HOM05D000599 ORTHO05D006883 2.8e-12 75.5 53 64.2
BraA03t13064Z Brassica rapa HOM05D000599 ORTHO05D006883 2.8e-12 75.5 53 64.2
Os01g0753100 Oryza sativa ssp. japonica HOM05D000599 ORTHO05D006883 2.8e-12 75.5 48 75.0
Sabra16G0245600 Salix brachista HOM05D000599 ORTHO05D006883 2.8e-12 75.5 58 63.8
Sc16g0007340 Simmondsia chinensis HOM05D000599 ORTHO05D006883 3.7e-12 75.1 55 65.5
Ah.04g164460 Amaranthus hybridus HOM05D000599 ORTHO05D006883 4.8e-12 74.7 53 67.9
AL3G27440 Arabidopsis lyrata HOM05D000599 ORTHO05D006883 4.8e-12 74.7 62 54.8
A03p39150 Brassica napus HOM05D000599 ORTHO05D006883 4.8e-12 74.7 54 63.0
C03p47500 Brassica napus HOM05D000599 ORTHO05D006883 4.8e-12 74.7 54 63.0
BolC3t17014H Brassica oleracea HOM05D000599 ORTHO05D006883 4.8e-12 74.7 54 63.0
Carub.0003s1473 Capsella rubella HOM05D000599 ORTHO05D006883 4.8e-12 74.7 53 62.3
CARHR090050 Cardamine hirsuta HOM05D000599 ORTHO05D006883 4.8e-12 74.7 61 55.7
AUR62019503 Chenopodium quinoa HOM05D000599 ORTHO05D006883 4.8e-12 74.7 53 66.0
Thhalv10020985m.g Eutrema salsugineum HOM05D000599 ORTHO05D006883 4.8e-12 74.7 53 62.3
GSVIVG01014259001 Vitis vinifera HOM05D000599 ORTHO05D006883 4.8e-12 74.7 53 69.8
Eucgr.F01180 Eucalyptus grandis HOM05D000599 ORTHO05D006883 6.2e-12 74.3 66 57.6
RcHm_v2.0_Chr5g0031931 Rosa chinensis HOM05D000599 ORTHO05D006883 6.2e-12 74.3 59 66.1
Aa31LG8G2300 Aethionema arabicum HOM05D000599 ORTHO05D006883 1.1e-11 73.6 53 62.3
CAN.G329.7 Capsicum annuum HOM05D000599 ORTHO05D006883 1.1e-11 73.6 66 57.6
SGA_v2.0_scaffold73G24221 Striga asiatica HOM05D000599 ORTHO05D006883 1.1e-11 73.6 68 58.8
AT3G15090 Arabidopsis thaliana HOM05D000599 ORTHO05D006883 1.4e-11 73.2 53 58.5
Solyc12g014050.2 Solanum lycopersicum HOM05D000599 ORTHO05D006883 1.4e-11 73.2 55 63.6
Thecc.07G100100 Theobroma cacao HOM05D000599 ORTHO05D006883 1.4e-11 73.2 63 61.9
Manes.12G158400 Manihot esculenta HOM05D000599 ORTHO05D006883 1.8e-11 72.8 56 64.3
Sopen12g005790 Solanum pennellii HOM05D000599 ORTHO05D006883 1.8e-11 72.8 55 63.6
PGSC0003DMG400015372 Solanum tuberosum HOM05D000599 ORTHO05D006883 1.8e-11 72.8 53 66.0
Sp3g13290 Schrenkiella parvula HOM05D000599 ORTHO05D006883 2.4e-11 72.4 53 62.3
Hund22810 Selenicereus undatus HOM05D000599 ORTHO05D006883 2.4e-11 72.4 53 66.0
EL10Ac4g08277 Beta vulgaris HOM05D000599 ORTHO05D006883 3.1e-11 72.0 53 62.3
CANSAT35G1865 Cannabis sativa HOM05D000599 ORTHO05D006883 3.1e-11 72.0 53 62.3
Cpa.g.sc80.13 Carica papaya HOM05D000599 ORTHO05D006883 3.1e-11 72.0 61 57.4
SalBow7G1016 Salvia bowleyana HOM05D000599 ORTHO05D006883 3.1e-11 72.0 53 62.3
unitig_52.g17400 Utricularia gibba HOM05D000599 ORTHO05D006883 3.1e-11 72.0 53 62.3
Duzib170G0842 Durio zibethinus HOM05D000599 ORTHO05D006883 4.0e-11 71.6 63 60.3
Nitab4.5_0000332g0200 Nicotiana tabacum HOM05D000599 ORTHO05D006883 5.3e-11 71.2 55 63.6
Nitab4.5_0003033g0020 Nicotiana tabacum HOM05D000599 ORTHO05D006883 5.3e-11 71.2 55 63.6
arahy.Tifrunner.gnm1.ann1.10FGX8 Arachis hypogaea HOM05D000599 ORTHO05D006883 6.9e-11 70.9 65 52.3
arahy.Tifrunner.gnm1.ann1.PD8C8E Arachis hypogaea HOM05D000599 ORTHO05D006883 6.9e-11 70.9 65 52.3
CsaV3_3G019590 Cucumis sativus L. HOM05D000599 ORTHO05D006883 6.9e-11 70.9 55 60.0
HPP92_021507 Vanilla planifolia HOM05D000599 ORTHO05D006883 9.0e-11 70.5 49 71.4
Gorai.002G066100 Gossypium raimondii HOM05D000599 ORTHO05D006883 1.2e-10 70.1 53 62.3
Peaxi162Scf00000g00284 Petunia axillaris HOM05D000599 ORTHO05D006883 1.2e-10 70.1 65 55.4
VMungo1080G1405 Vigna mungo HOM05D000599 ORTHO05D006883 1.2e-10 70.1 54 57.4
DCAR_021003 Daucus carota HOM05D000599 ORTHO05D006883 1.5e-10 69.7 57 61.4
ClCG05G009200 Citrullus lanatus HOM05D000599 ORTHO05D006883 2.0e-10 69.3 53 60.4
Gohir.A01G060100 Gossypium hirsutum HOM05D000599 ORTHO05D006883 2.0e-10 69.3 53 62.3
Gohir.D01G046600 Gossypium hirsutum HOM05D000599 ORTHO05D006883 2.0e-10 69.3 53 62.3
HPP92_021512 Vanilla planifolia HOM05D000599 ORTHO05D006883 2.0e-10 69.3 49 69.4
Duzib213G1012 Durio zibethinus HOM05D000599 ORTHO05D006883 4.5e-10 68.2 63 58.7
HanXRQChr10g0302461 Helianthus annuus HOM05D000599 ORTHO05D006883 4.5e-10 68.2 55 56.4
SMO116G0426 Selaginella moellendorffii HOM05D000599 ORTHO05D006883 7.6e-10 67.4 56 53.6
Phvul.005G069200 Phaseolus vulgaris HOM05D000599 ORTHO05D006883 1.0e-09 67.0 65 50.8
SEGI_01885 Sequoiadendron giganteum HOM05D000599 ORTHO05D006883 1.0e-09 67.0 50 68.0
Aqoxy4G00576 Aquilegia oxysepala HOM05D000599 ORTHO05D006883 1.3e-09 66.6 70 54.3
Pp3c14_1550 Physcomitrium patens HOM05D000599 ORTHO05D006883 2.9e-09 65.5 49 59.2
Cpa.g.c46715 Carica papaya HOM05D000599 ORTHO05D006883 3.8e-09 65.1 60 53.3
Glyma.13G272900 Glycine max HOM05D000599 ORTHO05D006883 1.1e-08 63.5 58 50.0
Lalb_Chr25g0286171 Lupinus albus HOM05D000599 ORTHO05D006883 1.1e-08 63.5 57 54.4
Ca_04028_v3 Cicer arietinum L. HOM05D000599 ORTHO05D006883 1.4e-08 63.2 61 54.1
Glyma.12G227400 Glycine max HOM05D000599 ORTHO05D006883 1.9e-08 62.8 65 47.7
Medtr2g078520 Medicago truncatula HOM05D000599 ORTHO05D006883 1.9e-08 62.8 54 59.3
Mapoly0049s0129 Marchantia polymorpha HOM05D000599 ORTHO05D006883 2.5e-08 62.4 75 45.3
AagrBONN_evm.TU.Sc2ySwM_368.514 Anthoceros agrestis HOM05D000599 ORTHO05D006883 2.1e-07 59.3 49 55.1
TPR.G29650 Trifolium pratense HOM05D000599 ORTHO05D006883 2.1e-07 59.3 49 55.1
Lj3g0008187 Lotus japonicus HOM05D000599 ORTHO05D006883 2.7e-07 58.9 53 50.9
ECA234G4269 Erigeron canadensis HOM05D001613 ORTHO05D006883 7.9e-07 57.4 44 59.1
THA.LOC104798757 Tarenaya hassleriana HOM05D000599 ORTHO05D006883 3.0e-06 55.5 55 56.4
Psat5g241360 Pisum sativum HOM05D000599 ORTHO05D006883 8.7e-06 53.9 70 42.9
SGA_v2.0_scaffold34G13792 Striga asiatica HOM05D000605 ORTHO05D003395 8.7e-06 53.9 42 57.1


User provided reference genes

Program Settings