Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.1e-52 208.8 104 100.0
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.8e-48 195.7 104 94.2
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.5e-20 101.7 103 52.4
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 5.1e-19 97.8 91 56.0
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 8.2e-17 90.5 99 51.5
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 1.1e-16 90.1 91 51.6
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 1.4e-16 89.7 86 55.8
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 6.9e-16 87.4 85 56.5
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.6e-15 85.5 84 54.8
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 3.4e-15 85.1 80 53.8
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 4.5e-15 84.7 80 53.8
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 4.5e-15 84.7 82 51.2
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 7.7e-15 84.0 93 46.2
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 1.3e-14 83.2 88 51.1
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.7e-14 82.8 86 47.7
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 1.7e-14 82.8 86 50.0
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.7e-14 82.8 97 48.5
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 2.9e-14 82.0 95 48.4
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.9e-14 82.0 95 48.4
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.9e-14 82.0 95 48.4
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 5.0e-14 81.3 93 46.2
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 5.0e-14 81.3 92 48.9
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 5.0e-14 81.3 92 48.9
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 6.5e-14 80.9 92 44.6
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 8.5e-14 80.5 86 48.8
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.1e-13 80.1 95 54.7
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.4e-13 79.7 94 47.9
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.4e-13 79.7 88 48.9
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 1.4e-13 79.7 88 48.9
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.9e-13 79.3 78 56.4
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 2.5e-13 79.0 89 55.1
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 2.5e-13 79.0 85 49.4
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 2.5e-13 79.0 88 52.3
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 2.5e-13 79.0 68 60.3
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 7.2e-13 77.4 78 51.3
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 7.2e-13 77.4 88 50.0
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 9.4e-13 77.0 95 46.3
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 9.4e-13 77.0 80 51.2
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 2.1e-12 75.9 95 48.4
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 3.9e-11 71.6 98 44.9
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 3.9e-11 71.6 98 44.9
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 6.7e-11 70.9 77 51.9
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.0e-10 69.3 98 43.9
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 4.3e-10 68.2 73 52.1
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 7.4e-10 67.4 84 44.0
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 1.7e-09 66.2 85 48.2
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 1.7e-09 66.2 87 48.3
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 1.7e-09 66.2 83 44.6
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 2.8e-09 65.5 81 46.9
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 2.8e-09 65.5 89 41.6
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.4e-08 63.2 85 44.7
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.1e-08 62.0 59 50.8
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.1e-08 62.0 59 50.8
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 5.3e-08 61.2 98 35.7
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 5.3e-08 61.2 77 41.6
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 1.2e-07 60.1 67 52.2
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 1.2e-07 60.1 66 51.5
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.5e-07 59.7 80 42.5
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 1.5e-07 59.7 82 45.1
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 3.4e-07 58.5 86 45.3
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 3.8e-06 55.1 51 54.9
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.8e-06 55.1 85 43.5
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 5.0e-06 54.7 77 40.3
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 6.5e-06 54.3 72 41.7
SMO196G0045 Selaginella moellendorffii HOM05D002359 ORTHO05D002394 6.5e-06 54.3 97 39.2
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 8.5e-06 53.9 91 45.1


User provided reference genes

Program Settings