Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 5.6e-50 200.7 103 100.0
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 6.0e-36 154.1 170 55.3
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 1.3e-27 126.3 140 52.1
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 4.0e-24 114.8 139 46.0
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 6.8e-24 114.0 148 46.6
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 1.2e-23 113.2 153 45.8
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 1.5e-23 112.8 184 40.8
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 2.0e-23 112.5 138 48.6
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 2.6e-23 112.1 132 47.7
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 2.6e-23 112.1 132 47.7
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 7.6e-23 110.5 179 39.7
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 1.3e-22 109.8 148 45.9
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.3e-22 109.8 147 45.6
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 2.9e-22 108.6 183 38.8
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 3.8e-22 108.2 156 43.6
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 3.8e-22 108.2 171 40.4
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 6.4e-22 107.5 157 40.8
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 6.4e-22 107.5 152 43.4
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 1.1e-21 106.7 191 39.3
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.4e-21 105.5 178 39.3
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 3.2e-21 105.1 149 44.3
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 4.2e-21 104.8 186 38.2
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 7.1e-21 104.0 189 37.6
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 7.1e-21 104.0 171 39.8
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 7.1e-21 104.0 188 37.8
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 9.2e-21 103.6 184 39.7
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 1.2e-20 103.2 178 38.2
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.6e-20 102.8 192 36.5
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 2.1e-20 102.4 184 37.0
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 2.1e-20 102.4 183 38.8
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 2.1e-20 102.4 189 36.5
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 2.7e-20 102.1 176 39.8
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 2.7e-20 102.1 172 40.1
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 2.7e-20 102.1 192 36.5
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 4.6e-20 101.3 184 38.6
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 4.6e-20 101.3 180 37.8
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 4.6e-20 101.3 182 38.5
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 4.6e-20 101.3 183 38.8
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 6.0e-20 100.9 169 39.6
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 6.0e-20 100.9 191 36.6
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 6.0e-20 100.9 193 36.8
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 7.8e-20 100.5 184 38.0
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 7.8e-20 100.5 188 37.8
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 1.0e-19 100.1 168 39.9
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 1.0e-19 100.1 168 39.9
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 1.0e-19 100.1 188 36.7
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.3e-19 99.8 181 37.0
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 1.3e-19 99.8 183 37.2
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.3e-19 99.8 182 38.5
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 1.3e-19 99.8 183 36.6
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 1.7e-19 99.4 186 36.6
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 1.7e-19 99.4 177 36.7
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.3e-19 99.0 182 36.8
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 2.3e-19 99.0 188 36.7
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 3.9e-19 98.2 184 37.5
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 5.1e-19 97.8 187 37.4
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 5.1e-19 97.8 183 36.6
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 5.1e-19 97.8 183 36.6
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 5.1e-19 97.8 188 36.7
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 6.6e-19 97.4 183 37.2
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 6.6e-19 97.4 194 34.5
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 8.7e-19 97.1 198 35.4
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 1.1e-18 96.7 188 35.1
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 1.1e-18 96.7 191 35.6
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 1.5e-18 96.3 187 36.4
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.5e-18 96.3 189 36.0
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.5e-18 96.3 184 37.0
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.5e-18 96.3 185 35.7
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 1.5e-18 96.3 182 36.8
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-18 96.3 182 35.7
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-18 96.3 182 35.7
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.9e-18 95.9 182 35.2
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 3.3e-18 95.1 134 45.5
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 3.3e-18 95.1 172 37.8
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 3.3e-18 95.1 183 35.5
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 4.3e-18 94.7 187 36.4
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 4.3e-18 94.7 190 35.8
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 4.3e-18 94.7 190 35.8
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 4.3e-18 94.7 183 36.1
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 5.6e-18 94.4 183 37.7
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 5.6e-18 94.4 183 36.1
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 7.3e-18 94.0 194 36.1
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 9.6e-18 93.6 186 34.9
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 9.6e-18 93.6 183 36.6
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 9.6e-18 93.6 203 35.5
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 9.6e-18 93.6 182 34.6
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 1.3e-17 93.2 197 35.0
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 1.3e-17 93.2 181 35.4
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 2.1e-17 92.4 199 34.7
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 2.1e-17 92.4 183 35.5
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.1e-17 92.4 161 37.9
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 2.1e-17 92.4 187 34.8
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.8e-17 92.0 182 36.3
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 2.8e-17 92.0 185 32.4
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.8e-17 92.0 182 34.6
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 4.8e-17 91.3 62 71.0
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 4.8e-17 91.3 191 34.6
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 6.2e-17 90.9 189 34.9
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 6.2e-17 90.9 183 35.5
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 8.1e-17 90.5 62 71.0
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 1.1e-16 90.1 183 35.5
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.1e-16 90.1 198 33.3
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 2.4e-16 89.0 181 33.7
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.4e-16 89.0 185 35.1
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 4.0e-16 88.2 181 35.4
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 4.0e-16 88.2 193 33.7
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 4.0e-16 88.2 197 32.5
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 4.0e-16 88.2 62 67.7
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 5.3e-16 87.8 200 33.5
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 5.3e-16 87.8 188 34.6
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 1.5e-15 86.3 191 34.0
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 1.5e-15 86.3 62 64.5
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.6e-15 85.5 190 34.7
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 3.4e-15 85.1 182 34.1
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 3.4e-15 85.1 180 33.9
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 3.4e-15 85.1 59 66.1
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 3.4e-15 85.1 62 66.1
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 3.4e-15 85.1 62 66.1
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 4.4e-15 84.7 181 34.3
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 4.4e-15 84.7 193 32.1
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 5.8e-15 84.3 182 33.5
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 9.9e-15 83.6 61 70.5
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 1.3e-14 83.2 62 64.5
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.3e-14 83.2 62 64.5
MBI14_g13584_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.3e-14 83.2 62 66.1
vmacro06994 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.3e-14 83.2 62 66.1
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 1.7e-14 82.8 223 30.5
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 1.7e-14 82.8 179 34.6
Solyc04g072110.4 Solanum lycopersicum HOM05D003476 ORTHO05D004057 1.7e-14 82.8 59 67.8
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 2.2e-14 82.4 157 36.9
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 2.2e-14 82.4 62 62.9
Prupe.2G246200 Prunus persica HOM05D003476 ORTHO05D004057 2.9e-14 82.0 59 67.8
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 3.8e-14 81.6 61 67.2
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 3.8e-14 81.6 64 65.6
Oeu036632.1 Olea europaea HOM05D003476 ORTHO05D004057 3.8e-14 81.6 59 66.1
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 4.9e-14 81.3 208 31.2
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 4.9e-14 81.3 182 31.3
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 6.4e-14 80.9 62 64.5
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 8.4e-14 80.5 61 67.2
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.4e-13 79.7 195 32.3
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 4.2e-13 78.2 61 63.9
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 5.4e-13 77.8 62 61.3
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 9.3e-13 77.0 76 55.3
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 1.6e-12 76.3 113 46.0
AagrBONN_evm.TU.Sc2ySwM_228.5499 Anthoceros agrestis HOM05D003476 ORTHO05D004057 1.6e-12 76.3 62 56.5
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.7e-12 75.5 57 63.2
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 3.5e-12 75.1 62 59.7
ATR0618G195 Amborella trichopoda HOM05D003476 ORTHO05D004057 1.0e-11 73.6 60 60.0
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 2.5e-10 68.9 52 63.5
CBR_g48322 Chara braunii HOM05D003476 ORTHO05D004057 5.6e-10 67.8 132 34.8
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 7.3e-10 67.4 62 58.1
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 9.6e-10 67.0 41 73.2
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 1.3e-09 66.6 38 84.2
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.6e-09 66.2 38 78.9
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 3.6e-09 65.1 40 72.5
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 4.8e-09 64.7 41 73.2
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 6.2e-09 64.3 42 71.4
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 8.1e-09 63.9 35 82.9
Rhsim03G0140200 Rhododendron simsii HOM05D003476 ORTHO05D004057 8.1e-09 63.9 95 43.2
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 3.1e-08 62.0 38 76.3
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 3.1e-08 62.0 38 73.7
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 4.0e-08 61.6 36 80.6
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 4.0e-08 61.6 38 73.7
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 4.0e-08 61.6 38 73.7
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 4.0e-08 61.6 42 69.0
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 5.3e-08 61.2 36 77.8
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 5.3e-08 61.2 36 77.8
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 9.0e-08 60.5 35 80.0
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.5e-07 59.7 37 75.7
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 1.5e-07 59.7 43 72.1
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 2.0e-07 59.3 40 67.5
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 4.5e-07 58.2 35 77.1
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 4.5e-07 58.2 93 30.1
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 4.5e-07 58.2 40 72.5
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 5.8e-07 57.8 35 77.1
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 2.2e-06 55.8 38 68.4
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 2.9e-06 55.5 40 62.5
MBI08_g04934_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.8e-06 55.1 65 49.2
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 6.4e-06 54.3 38 68.4


User provided reference genes

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