Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.0e-76 288.1 195 100.0
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 4.6e-61 238.4 152 86.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.1e-38 164.1 152 61.2
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.1e-38 161.4 148 59.5
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.9e-36 155.6 153 56.9
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 6.6e-36 154.8 151 61.6
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 2.2e-31 139.8 151 55.6
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.1e-30 137.5 149 54.4
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.1e-30 137.5 157 54.8
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.1e-30 137.5 153 54.9
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 1.4e-30 137.1 151 55.0
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.9e-30 136.7 157 54.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.4e-30 136.3 157 54.8
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 4.2e-30 135.6 158 51.9
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 4.2e-30 135.6 148 53.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 4.2e-30 135.6 155 54.8
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 5.4e-30 135.2 158 52.5
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 5.4e-30 135.2 151 52.3
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.2e-29 134.0 158 53.2
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.6e-29 133.7 161 52.8
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 4.6e-29 132.1 158 52.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.3e-28 130.6 152 51.3
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.3e-28 130.6 160 51.9
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.9e-28 129.0 148 50.7
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 5.1e-28 128.6 151 51.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 8.7e-28 127.9 160 49.4
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.5e-27 127.1 157 51.0
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.3e-27 125.6 108 63.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 7.3e-27 124.8 195 44.6
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.6e-26 123.6 157 50.3
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.1e-26 123.2 148 50.7
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.8e-26 122.9 162 51.2
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.6e-26 122.5 150 53.3
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.8e-26 122.1 158 50.0
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.8e-26 122.1 158 50.0
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 4.8e-26 122.1 155 47.7
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 6.2e-26 121.7 157 50.3
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.2e-26 121.7 153 51.6
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 6.2e-26 121.7 151 51.7
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.4e-25 120.6 161 49.7
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.8e-25 120.2 159 47.2
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.1e-25 119.4 161 50.3
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.1e-25 119.4 153 47.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 6.9e-25 118.2 156 52.6
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 6.9e-25 118.2 157 47.1
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.2e-24 117.5 160 46.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.2e-24 117.5 148 50.0
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.5e-24 117.1 157 48.4
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.0e-24 116.7 150 50.0
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-24 116.7 161 46.0
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.6e-24 116.3 163 47.9
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.6e-24 116.3 163 47.9
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 3.4e-24 115.9 156 50.6
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 3.4e-24 115.9 156 48.1
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 4.5e-24 115.5 153 50.3
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.8e-24 115.2 156 48.1
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.3e-23 114.0 156 47.4
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.7e-23 113.6 153 51.0
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.2e-23 113.2 175 44.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.8e-23 112.5 148 48.6
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.4e-23 111.7 156 46.8
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 8.4e-23 111.3 146 50.0
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.1e-22 110.9 155 45.8
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.2e-22 109.4 164 46.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 4.2e-22 109.0 156 50.0
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.4e-22 108.6 154 48.1
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.5e-21 105.9 155 49.0
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.6e-21 105.5 161 44.1
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 7.9e-21 104.8 103 55.3
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.3e-20 104.0 152 46.1
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.8e-20 103.6 158 45.6
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 2.3e-20 103.2 160 43.1
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.3e-20 103.2 156 44.9
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 3.0e-20 102.8 162 42.6
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 8.7e-20 101.3 149 47.0
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 8.7e-20 101.3 161 43.5
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.1e-19 100.9 163 42.3
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.1e-19 100.9 102 57.8
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.1e-19 100.9 166 44.0
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.5e-19 100.5 161 43.5
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.5e-19 100.5 161 43.5
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.5e-19 100.5 158 42.4
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.5e-19 100.5 151 44.4
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.5e-19 100.5 102 55.9
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.9e-19 100.1 198 36.9
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.5e-19 99.8 102 58.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.5e-19 99.8 102 58.8
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 2.5e-19 99.8 158 46.2
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.5e-19 99.8 155 46.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 2.5e-19 99.8 102 56.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.3e-19 99.4 152 44.7
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 4.3e-19 99.0 99 58.6
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.3e-18 97.4 166 42.2
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.1e-18 96.7 156 42.9
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 4.8e-18 95.5 155 46.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 8.1e-18 94.7 162 43.2
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.4e-17 94.0 166 41.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.4e-17 94.0 102 57.8
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.4e-17 94.0 161 42.9
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.8e-17 93.6 114 50.9
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.8e-17 93.6 116 50.9
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.8e-17 93.6 116 50.9
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.0e-17 92.4 156 41.7
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 6.9e-17 91.7 110 51.8
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 5.8e-16 88.6 102 52.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 7.6e-16 88.2 106 50.9
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 1.3e-15 87.4 148 41.2
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.2e-15 86.7 105 55.2
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.9e-15 86.3 179 38.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.1e-14 84.3 109 53.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.1e-14 84.3 159 41.5
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.9e-14 83.6 157 40.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 4.2e-14 82.4 155 40.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.2e-13 80.9 109 43.1
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.6e-13 80.5 152 42.1
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 4.6e-13 79.0 98 54.1
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.0e-12 77.8 104 48.1
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.0e-12 77.8 159 38.4
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 5.1e-12 75.5 162 35.8
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.5e-11 73.9 103 48.5
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.3e-11 72.4 156 37.8
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 7.4e-11 71.6 157 36.9
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 9.6e-11 71.2 102 46.1
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 2.1e-10 70.1 225 32.0
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.1e-10 70.1 106 46.2
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 4.8e-10 68.9 88 50.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 6.9e-09 65.1 107 41.1
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 9.0e-09 64.7 74 51.4
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.6e-08 63.2 107 40.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 5.8e-08 62.0 107 40.2
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 5.8e-08 62.0 100 41.0
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 7.6e-08 61.6 97 43.3
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.2e-06 56.2 72 50.0
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.2e-06 56.2 46 58.7
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.2e-06 56.2 46 58.7
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.2e-06 56.2 46 58.7
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 9.3e-06 54.7 52 55.8
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 9.3e-06 54.7 52 55.8


User provided reference genes

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