Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.3e-252 875.9 443 100.0
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.4e-237 824.3 443 94.6
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 3.6e-207 724.9 440 82.0
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 1.8e-206 722.6 443 80.1
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 9.0e-206 720.3 437 81.7
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 1.5e-205 719.5 443 80.1
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 3.8e-204 714.9 436 81.9
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 4.9e-204 714.5 434 80.9
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 8.4e-204 713.8 437 80.8
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.4e-203 713.0 437 81.2
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 3.2e-203 711.8 437 81.0
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-202 709.9 432 81.5
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.1e-202 709.1 437 79.6
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.7e-202 708.8 437 81.2
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 2.7e-202 708.8 437 80.3
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 3.5e-202 708.4 441 80.5
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 3.5e-202 708.4 443 78.6
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 7.9e-202 707.2 437 79.6
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.0e-201 706.8 437 79.9
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.3e-201 706.4 437 80.3
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.3e-201 706.4 437 79.6
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.8e-201 706.1 437 79.6
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.8e-201 706.1 437 81.0
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.3e-201 705.7 437 79.4
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 3.0e-201 705.3 442 79.0
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.1e-201 704.5 437 79.6
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 5.1e-201 704.5 437 79.9
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 5.1e-201 704.5 437 79.9
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 8.7e-201 703.7 437 79.9
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.5e-200 702.2 437 79.6
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.5e-200 702.2 437 80.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.5e-200 702.2 437 79.4
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 3.3e-200 701.8 437 79.9
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.3e-200 701.8 437 79.6
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 4.3e-200 701.4 437 79.4
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.6e-200 701.0 437 79.4
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 7.4e-200 700.7 437 79.2
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 7.4e-200 700.7 437 79.4
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 9.6e-200 700.3 437 79.2
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.3e-199 699.9 437 79.9
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 2.8e-199 698.7 437 78.9
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 2.8e-199 698.7 437 79.9
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.8e-199 698.7 437 79.2
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.8e-199 698.7 437 79.6
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 3.7e-199 698.4 437 79.4
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 3.7e-199 698.4 437 78.9
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 4.8e-199 698.0 437 78.9
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 4.8e-199 698.0 437 78.7
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 4.8e-199 698.0 437 79.2
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 6.2e-199 697.6 437 78.9
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.2e-199 697.6 437 79.2
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 8.1e-199 697.2 437 79.4
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 3.1e-198 695.3 437 78.7
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 4.0e-198 694.9 437 78.3
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 9.0e-198 693.7 437 78.3
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 9.0e-198 693.7 437 78.9
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 9.0e-198 693.7 436 78.2
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 9.0e-198 693.7 437 78.9
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.2e-197 693.3 437 78.0
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 1.5e-197 693.0 437 78.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.5e-197 693.0 437 78.5
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 2.0e-197 692.6 437 77.8
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.0e-197 692.6 437 77.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 2.6e-197 692.2 437 78.5
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 2.6e-197 692.2 437 78.7
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 2.6e-197 692.2 437 78.0
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 2.6e-197 692.2 437 78.7
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 3.4e-197 691.8 437 78.3
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 3.4e-197 691.8 442 77.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 3.4e-197 691.8 437 78.5
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 3.4e-197 691.8 437 79.2
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.4e-197 691.8 437 77.6
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 4.5e-197 691.4 442 78.1
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 5.8e-197 691.0 437 78.5
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 7.6e-197 690.6 437 78.0
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 7.6e-197 690.6 437 77.6
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 7.6e-197 690.6 436 78.2
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.9e-197 690.3 429 79.7
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 9.9e-197 690.3 437 77.6
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.3e-196 689.9 437 78.7
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 1.7e-196 689.5 437 78.3
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 4.9e-196 688.0 437 77.8
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 4.9e-196 688.0 434 78.6
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 8.4e-196 687.2 437 77.6
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-195 686.8 437 77.8
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-195 686.8 437 77.8
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-195 686.8 437 77.8
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.1e-195 686.8 437 77.8
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.9e-195 686.0 437 76.9
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 3.2e-195 685.3 437 77.8
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 4.2e-195 684.9 437 77.8
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 5.5e-195 684.5 437 77.8
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 9.3e-195 683.7 437 76.7
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 9.3e-195 683.7 437 77.8
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 9.3e-195 683.7 437 77.8
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.3e-195 683.7 437 78.0
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.3e-193 679.9 437 76.2
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.8e-193 679.5 437 78.3
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 2.3e-193 679.1 437 77.3
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 5.1e-193 677.9 463 73.9
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.5e-192 676.4 437 76.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.5e-192 676.4 450 75.3
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.9e-192 676.0 437 76.4
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 2.5e-192 675.6 437 76.2
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 4.3e-192 674.9 421 80.5
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.1e-190 670.2 437 74.6
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 4.0e-190 668.3 437 76.7
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.4e-187 659.8 437 75.5
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.7e-186 655.6 446 73.5
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 1.0e-185 653.7 411 78.8
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.3e-185 653.3 437 75.3
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.8e-185 652.9 437 76.0
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.3e-185 652.5 437 75.7
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 4.3e-184 648.3 437 75.7
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.2e-183 644.0 437 75.3
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.6e-178 629.8 388 79.9
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.7e-178 629.0 441 70.3
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 3.7e-175 618.6 442 71.3
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.5e-173 613.2 440 69.8
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.6e-173 612.5 438 70.8
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.6e-170 603.2 434 70.0
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 4.8e-167 591.7 437 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 4.1e-166 588.6 471 64.3
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.2e-162 577.0 433 67.9
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 2.0e-160 569.7 433 66.1
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.9e-155 553.1 353 77.6
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 8.0e-154 547.7 434 66.1
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.7e-151 540.0 483 61.7
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.5e-144 516.9 325 80.0
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 5.4e-142 508.4 322 80.1
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 2.2e-119 433.3 258 84.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.8e-113 413.7 442 50.2
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 5.2e-113 412.1 337 65.6
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 5.8e-112 408.7 269 76.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 5.8e-112 408.7 257 78.6
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.7e-109 399.8 257 77.0
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 2.0e-104 383.6 237 78.9
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.4e-86 323.6 403 49.6
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 3.2e-86 323.2 201 79.6
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 3.9e-84 316.2 202 78.2
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 2.5e-78 297.0 172 82.0
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 4.3e-75 286.2 181 77.3
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 7.4e-75 285.4 175 76.0
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 5.7e-67 259.2 218 63.8
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 3.8e-63 246.5 413 39.5
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.7e-61 240.4 304 46.4
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 3.9e-60 236.5 221 57.5
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-59 235.0 226 56.6
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.3e-58 231.5 225 56.0
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 4.1e-57 226.5 248 52.0
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 2.1e-53 214.2 223 52.9
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 2.3e-52 210.7 119 82.4
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.2e-46 190.3 116 76.7
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 3.7e-42 176.8 187 55.1
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.3e-34 151.8 82 84.1
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.7e-34 151.4 86 81.4
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.6e-27 127.5 154 45.5
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 4.9e-26 123.2 131 47.3
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.6e-21 108.2 67 80.6
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.4e-20 105.1 135 45.9
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 4.0e-20 103.6 74 64.9
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 6.8e-20 102.8 125 47.2
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 5.4e-17 93.2 215 33.5
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 3.0e-15 87.4 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 6.6e-15 86.3 66 65.2
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.1e-14 85.5 55 72.7
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.1e-14 85.5 75 53.3
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 8.0e-13 79.3 62 66.1
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 1.2e-11 75.5 49 77.6
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.5e-11 75.1 69 60.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 1.3e-10 72.0 97 50.5
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.7e-10 71.6 46 71.7
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.6e-08 65.1 37 83.8
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 7.8e-08 62.8 52 65.4
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 5.0e-07 60.1 41 73.2
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 1.1e-06 58.9 58 53.4
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 5.6e-06 56.6 31 80.6


User provided reference genes

Program Settings