Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0140 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 2.3e-125 452.2 221 100.0
CDE06G2089 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 1.6e-49 200.3 110 88.2
ATR0829G044 Amborella trichopoda HOM05D006678 ORTHO05D008388 3.6e-38 162.5 94 80.9
TAR629G1392 Trochodendron aralioides HOM05D006678 ORTHO05D008388 1.4e-37 160.6 112 71.4
Actinidia18705 Actinidia chinensis HOM05D006678 ORTHO05D008388 5.7e-36 155.2 117 69.2
Dinv17257 Davidia involucrata HOM05D006678 ORTHO05D008388 5.7e-36 155.2 117 71.8
Nn1g01909 Nelumbo nucifera HOM05D006678 ORTHO05D008388 5.7e-36 155.2 115 67.8
Duzib177G0619 Durio zibethinus HOM05D006678 ORTHO05D008388 9.8e-36 154.5 102 74.5
Manes.09G127100 Manihot esculenta HOM05D006678 ORTHO05D008388 1.3e-35 154.1 99 76.8
Atru.chr12.1964 Acer truncatum HOM05D006678 ORTHO05D008388 1.7e-35 153.7 100 77.0
Thecc.05G213400 Theobroma cacao HOM05D006678 ORTHO05D008388 1.7e-35 153.7 98 77.6
Gohir.A13G156100 Gossypium hirsutum HOM05D006678 ORTHO05D008388 2.2e-35 153.3 98 77.6
Gohir.D13G161000 Gossypium hirsutum HOM05D006678 ORTHO05D008388 3.7e-35 152.5 98 77.6
Gorai.013G181600 Gossypium raimondii HOM05D006678 ORTHO05D008388 3.7e-35 152.5 98 77.6
Lsat_1_v5_gn_9_47480 Lactuca sativa HOM05D006678 ORTHO05D008388 4.9e-35 152.1 119 65.5
Psat7g171800 Pisum sativum HOM05D006678 ORTHO05D008388 4.9e-35 152.1 98 74.5
Prupe.2G326100 Prunus persica HOM05D006678 ORTHO05D008388 4.9e-35 152.1 102 75.5
Peaxi162Scf00133g00723 Petunia axillaris HOM05D006678 ORTHO05D008388 6.4e-35 151.8 110 66.4
Aqoxy3G02158 Aquilegia oxysepala HOM05D006678 ORTHO05D008388 8.3e-35 151.4 80 85.0
Duzib106G0454 Durio zibethinus HOM05D006678 ORTHO05D008388 8.3e-35 151.4 98 76.5
Medtr4g077807 Medicago truncatula HOM05D006678 ORTHO05D008388 8.3e-35 151.4 98 74.5
Migut.F00948 Erythranthe guttata HOM05D006678 ORTHO05D008388 1.4e-34 150.6 112 67.9
PSO063G3868 Papaver somniferum HOM05D006678 ORTHO05D008388 1.4e-34 150.6 110 67.3
PGR042G1336 Punica granatum HOM05D006678 ORTHO05D008388 1.4e-34 150.6 103 69.9
Ca_04918_v3 Cicer arietinum L. HOM05D006678 ORTHO05D008388 2.4e-34 149.8 98 73.5
Ciclev10023015m.g Citrus clementina HOM05D006678 ORTHO05D008388 2.4e-34 149.8 99 73.7
Glyma.11G091800 Glycine max HOM05D006678 ORTHO05D008388 2.4e-34 149.8 98 74.5
Potri.013G082100 Populus trichocarpa HOM05D006678 ORTHO05D008388 2.4e-34 149.8 89 77.5
TPR.G27187 Trifolium pratense HOM05D006678 ORTHO05D008388 2.4e-34 149.8 98 73.5
VMungo1127G1968 Vigna mungo HOM05D006678 ORTHO05D008388 2.4e-34 149.8 92 79.3
Lj3g0002487 Lotus japonicus HOM05D006678 ORTHO05D008388 3.2e-34 149.4 85 82.4
Phvul.011G020300 Phaseolus vulgaris HOM05D006678 ORTHO05D008388 3.2e-34 149.4 92 78.3
RcHm_v2.0_Chr1g0384211 Rosa chinensis HOM05D006678 ORTHO05D008388 3.2e-34 149.4 102 71.6
Lalb_Chr03g0024411 Lupinus albus HOM05D006678 ORTHO05D008388 4.1e-34 149.1 106 68.9
Actinidia34306 Actinidia chinensis HOM05D006678 ORTHO05D008388 5.4e-34 148.7 121 62.0
Lalb_Chr01g0000921 Lupinus albus HOM05D006678 ORTHO05D008388 5.4e-34 148.7 87 80.5
Oeu031704.1 Olea europaea HOM05D006678 ORTHO05D008388 5.4e-34 148.7 91 78.0
PSO782G5154 Papaver somniferum HOM05D006678 ORTHO05D008388 5.4e-34 148.7 110 66.4
THA.LOC104802920 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 5.4e-34 148.7 99 77.8
CANSAT21G1467 Cannabis sativa HOM05D006678 ORTHO05D008388 7.0e-34 148.3 75 89.3
Dinv29159 Davidia involucrata HOM05D006678 ORTHO05D008388 9.2e-34 147.9 117 68.4
HanXRQChr03g0088421 Helianthus annuus HOM05D006678 ORTHO05D008388 1.2e-33 147.5 102 74.5
Nitab4.5_0011186g0030 Nicotiana tabacum HOM05D006678 ORTHO05D008388 1.2e-33 147.5 129 60.5
QL09p024031 Quercus lobata HOM05D006678 ORTHO05D008388 1.2e-33 147.5 98 75.5
GSVIVG01024408001 Vitis vinifera HOM05D006678 ORTHO05D008388 1.2e-33 147.5 78 85.9
CiPaw.06G032600 Carya illinoinensis HOM05D006678 ORTHO05D008388 1.6e-33 147.1 98 75.5
Hma1.2p1_1680F.1_g297200 Hydrangea macrophylla HOM05D006678 ORTHO05D008388 1.6e-33 147.1 113 67.3
MD01G1236000 Malus domestica HOM05D006678 ORTHO05D008388 1.6e-33 147.1 100 73.0
Nitab4.5_0000021g0500 Nicotiana tabacum HOM05D006678 ORTHO05D008388 1.6e-33 147.1 120 63.3
SGA_v2.0_scaffold50G18440 Striga asiatica HOM05D006678 ORTHO05D008388 1.6e-33 147.1 115 64.3
COL.COLO4_11805 Corchorus olitorius HOM05D006678 ORTHO05D008388 2.0e-33 146.7 98 74.5
FAN03G1679 Fragaria x ananassa HOM05D006678 ORTHO05D008388 2.0e-33 146.7 77 85.7
FAN10G1380 Fragaria x ananassa HOM05D006678 ORTHO05D008388 2.0e-33 146.7 77 85.7
THA.LOC104827215 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 2.0e-33 146.7 99 75.8
TWI38G1314 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 2.7e-33 146.4 75 86.7
FAN01G1466 Fragaria x ananassa HOM05D006678 ORTHO05D008388 4.6e-33 145.6 77 85.7
TWI39G0757 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 4.6e-33 145.6 100 72.0
CSS0031072 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 5.9e-33 145.2 117 62.4
MELO3C024729.2 Cucumis melo HOM05D006678 ORTHO05D008388 7.8e-33 144.8 103 71.8
Rhsim03G0221400 Rhododendron simsii HOM05D006678 ORTHO05D008388 1.0e-32 144.4 105 69.5
Sabra13G0070800 Salix brachista HOM05D006678 ORTHO05D008388 1.0e-32 144.4 80 82.5
ClCG02G007680 Citrullus lanatus HOM05D006678 ORTHO05D008388 1.3e-32 144.1 95 74.7
Cc02_g00280 Coffea canephora HOM05D006678 ORTHO05D008388 1.7e-32 143.7 137 57.7
FvH4_7g33980 Fragaria vesca HOM05D006678 ORTHO05D008388 1.7e-32 143.7 77 84.4
BcaB04g21385 Brassica carinata HOM05D006678 ORTHO05D008388 3.9e-32 142.5 76 82.9
Glyma.12G017800 Glycine max HOM05D006678 ORTHO05D008388 3.9e-32 142.5 99 72.7
Sp3g02110 Schrenkiella parvula HOM05D006678 ORTHO05D008388 3.9e-32 142.5 76 82.9
Sed0006085 Sechium edule HOM05D006678 ORTHO05D008388 3.9e-32 142.5 89 75.3
vmacro06510 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 8.6e-32 141.4 129 59.7
CSS0016806 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 1.1e-31 141.0 79 79.7
Aa31LG5G13550 Aethionema arabicum HOM05D006678 ORTHO05D008388 1.5e-31 140.6 107 68.2
AT3G03070 Arabidopsis thaliana HOM05D006678 ORTHO05D008388 1.5e-31 140.6 107 68.2
arahy.Tifrunner.gnm1.ann1.Z69A25 Arachis hypogaea HOM05D006678 ORTHO05D008388 1.5e-31 140.6 98 69.4
Thhalv10021803m.g Eutrema salsugineum HOM05D006678 ORTHO05D008388 1.5e-31 140.6 107 68.2
BNapus_Darmor_BZH_scaffold_129p00040 Brassica napus HOM05D006678 ORTHO05D008388 1.9e-31 140.2 76 82.9
BolC1t05850H Brassica oleracea HOM05D006678 ORTHO05D008388 1.9e-31 140.2 76 82.9
BraA01t04595Z Brassica rapa HOM05D006678 ORTHO05D008388 1.9e-31 140.2 76 82.9
Carub.0003s0222 Capsella rubella HOM05D006678 ORTHO05D008388 1.9e-31 140.2 76 81.6
CsaV3_2G036030 Cucumis sativus L. HOM05D006678 ORTHO05D008388 1.9e-31 140.2 94 72.3
C05p63740 Brassica napus HOM05D006678 ORTHO05D008388 3.3e-31 139.4 76 82.9
BolC5t35043H Brassica oleracea HOM05D006678 ORTHO05D008388 3.3e-31 139.4 76 82.9
CARHR077080 Cardamine hirsuta HOM05D006678 ORTHO05D008388 3.3e-31 139.4 107 67.3
Hund09791 Selenicereus undatus HOM05D006678 ORTHO05D008388 3.3e-31 139.4 102 66.7
MSTRG.26930 Avicennia marina HOM05D006678 ORTHO05D008388 4.3e-31 139.0 112 61.6
Solyc03g097010.3 Solanum lycopersicum HOM05D006678 ORTHO05D008388 4.3e-31 139.0 115 65.2
AL3G12580 Arabidopsis lyrata HOM05D006678 ORTHO05D008388 5.6e-31 138.7 107 67.3
Sopen03g027760 Solanum pennellii HOM05D006678 ORTHO05D008388 5.6e-31 138.7 115 65.2
unitig_90.g27534 Utricularia gibba HOM05D006678 ORTHO05D008388 9.5e-31 137.9 97 69.1
SalBow2G2234 Salvia bowleyana HOM05D006678 ORTHO05D008388 1.2e-30 137.5 110 60.9
A05p44110 Brassica napus HOM05D006678 ORTHO05D008388 1.6e-30 137.1 78 79.5
BraSC90t46700Z Brassica rapa HOM05D006678 ORTHO05D008388 1.6e-30 137.1 78 79.5
EL10Ac3g05077 Beta vulgaris HOM05D006678 ORTHO05D008388 2.1e-30 136.7 103 68.9
DCAR_009010 Daucus carota HOM05D006678 ORTHO05D008388 2.1e-30 136.7 122 59.8
Gorai.013G182200 Gossypium raimondii HOM05D006678 ORTHO05D008388 4.0e-29 132.5 102 66.7
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 6.8e-29 131.7 66 89.4
Os08g0161700 Oryza sativa ssp. japonica HOM05D006678 ORTHO05D008388 2.6e-28 129.8 85 71.8
vmacro22173 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 2.6e-28 129.8 68 86.8
AUR62028176 Chenopodium quinoa HOM05D006678 ORTHO05D008388 5.8e-28 128.6 102 64.7
Zm00001eb172200 Zea mays HOM05D006678 ORTHO05D008388 7.5e-28 128.3 99 64.6
CAN.G1131.11 Capsicum annuum HOM05D006678 ORTHO05D008388 9.8e-28 127.9 66 86.4
Oeu063732.2 Olea europaea HOM05D006678 ORTHO05D008388 1.3e-27 127.5 62 91.9
AUR62002062 Chenopodium quinoa HOM05D006678 ORTHO05D008388 2.2e-27 126.7 102 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1248 Anthoceros agrestis HOM05D006678 ORTHO05D008388 2.4e-26 123.2 77 74.0
Pp3c24_2620 Physcomitrium patens HOM05D006678 ORTHO05D008388 7.0e-26 121.7 74 75.7
Nitab4.5_0000011g0100 Nicotiana tabacum HOM05D006678 ORTHO05D008388 1.6e-25 120.6 65 86.2
SEGI_28569 Sequoiadendron giganteum HOM05D006678 ORTHO05D008388 1.6e-25 120.6 61 86.9
Duzib128G0155 Durio zibethinus HOM05D006678 ORTHO05D008388 3.5e-25 119.4 70 80.0
Mapoly0006s0269 Marchantia polymorpha HOM05D006678 ORTHO05D008388 3.5e-25 119.4 74 70.3
SMO239G0055 Selaginella moellendorffii HOM05D006678 ORTHO05D008388 7.8e-25 118.2 72 75.0
ECA232G0519 Erigeron canadensis HOM05D006678 ORTHO05D008388 1.3e-24 117.5 89 62.9
Pp3c23_13320 Physcomitrium patens HOM05D006678 ORTHO05D008388 1.2e-22 110.9 81 66.7
Ah.13g072760 Amaranthus hybridus HOM05D006678 ORTHO05D008388 2.3e-21 106.7 65 76.9
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 3.0e-16 89.7 96 47.9
PRCOL_00006130 Prasinoderma coloniale HOM05D006678 ORTHO05D008388 1.5e-15 87.4 123 44.7
Cre03.g178250 Chlamydomonas reinhardtii HOM05D006678 ORTHO05D008388 1.9e-15 87.0 84 53.6
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 4.3e-15 85.9 98 45.9
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 1.1e-13 81.3 107 42.1
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 1.8e-13 80.5 99 42.4
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 4.0e-13 79.3 73 46.6
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 4.0e-13 79.3 93 44.1
Gohir.D13G160300 Gossypium hirsutum HOM05D006678 ORTHO05D008388 5.2e-13 79.0 62 71.0
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.2e-12 77.8 99 38.4
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 1.5e-12 77.4 73 49.3
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 2.6e-12 76.6 71 52.1
Sc06g0002530 Simmondsia chinensis HOM05D002239 ORTHO05D002408 3.4e-12 76.3 42 78.6
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 5.8e-12 75.5 73 52.1
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 5.8e-12 75.5 94 39.4
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 9.9e-12 74.7 71 53.5
TAR636G2077 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.3e-11 74.3 64 56.2
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 2.2e-11 73.6 75 45.3
arahy.Tifrunner.gnm1.ann1.GV73NI Arachis hypogaea HOM05D006678 ORTHO05D008388 2.9e-11 73.2 61 62.3
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 2.9e-11 73.2 97 41.2
Zm00001eb415610 Zea mays HOM05D006678 ORTHO05D008388 1.4e-10 70.9 68 57.4
CBR_g6679 Chara braunii HOM05D006678 ORTHO05D008388 3.2e-10 69.7 34 85.3
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 5.4e-10 68.9 51 60.8
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 2.1e-09 67.0 59 55.9
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 1.7e-08 63.9 54 50.0
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 8.6e-08 61.6 83 41.0
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 8.6e-08 61.6 82 40.2
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 1.5e-07 60.8 56 50.0
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 9.6e-07 58.2 64 45.3
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 1.2e-06 57.8 74 39.2
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 8.1e-06 55.1 75 42.7
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 8.1e-06 55.1 83 37.3


User provided reference genes

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