Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0109 Ceratophyllum demersum HOM05D000819 ORTHO05D000661 7.7e-42 173.3 83 100.0
ATR0602G007 Amborella trichopoda HOM05D000819 ORTHO05D000661 2.7e-10 68.6 54 57.4
TAR627G0922 Trochodendron aralioides HOM05D000819 ORTHO05D000661 2.7e-10 68.6 52 61.5
Zm00001eb370560 Zea mays HOM05D000819 ORTHO05D000661 4.5e-10 67.8 52 61.5
CDE03G0244 Ceratophyllum demersum HOM05D000819 ORTHO05D000661 5.9e-10 67.4 30 96.7
CDE04G0868 Ceratophyllum demersum HOM05D000819 ORTHO05D000661 5.9e-10 67.4 30 96.7
Aqoxy4G00318 Aquilegia oxysepala HOM05D000819 ORTHO05D000661 7.7e-10 67.0 29 100.0
PGSC0003DMG400020418 Solanum tuberosum HOM05D000819 ORTHO05D000661 7.7e-10 67.0 52 61.5
Duzib192G0479 Durio zibethinus HOM05D000819 ORTHO05D000661 1.0e-09 66.6 51 64.7
Potri.011G067300 Populus trichocarpa HOM05D000819 ORTHO05D000661 1.0e-09 66.6 29 96.6
RcHm_v2.0_Chr2g0129981 Rosa chinensis HOM05D000819 ORTHO05D000661 1.0e-09 66.6 53 60.4
GSVIVG01021226001 Vitis vinifera HOM05D000819 ORTHO05D000661 1.0e-09 66.6 29 96.6
Lj6g0026632 Lotus japonicus HOM05D000819 ORTHO05D000661 1.3e-09 66.2 29 96.6
MD09G1236500 Malus domestica HOM05D000819 ORTHO05D000661 1.3e-09 66.2 53 58.5
PSO229G0131 Papaver somniferum HOM05D000819 ORTHO05D000661 1.3e-09 66.2 47 68.1
Phvul.006G175200 Phaseolus vulgaris HOM05D000819 ORTHO05D000661 1.3e-09 66.2 29 96.6
Sabra11G0048700 Salix brachista HOM05D000819 ORTHO05D000661 1.3e-09 66.2 30 90.0
VMungo0540G1309 Vigna mungo HOM05D000819 ORTHO05D000661 1.3e-09 66.2 29 96.6
Zm00001eb152530 Zea mays HOM05D000819 ORTHO05D000661 1.3e-09 66.2 30 90.0
Glyma.15G083700 Glycine max HOM05D000819 ORTHO05D000661 1.7e-09 65.9 29 93.1
Manes.16G040800 Manihot esculenta HOM05D000819 ORTHO05D000661 1.7e-09 65.9 29 93.1
Manes.17G056700 Manihot esculenta HOM05D000819 ORTHO05D000661 1.7e-09 65.9 29 93.1
Potri.004G058000 Populus trichocarpa HOM05D000819 ORTHO05D000661 1.7e-09 65.9 29 93.1
CiPaw.09G070600 Carya illinoinensis HOM05D000819 ORTHO05D000661 2.2e-09 65.5 29 93.1
Thecc.06G169200 Theobroma cacao HOM05D000819 ORTHO05D000661 2.2e-09 65.5 48 66.7
arahy.Tifrunner.gnm1.ann1.5Z1ZDF Arachis hypogaea HOM05D000819 ORTHO05D000661 2.9e-09 65.1 76 48.7
MSTRG.15088 Avicennia marina HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
EL10Ac8g20588 Beta vulgaris HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
Cc05_g08430 Coffea canephora HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
DCAR_013275 Daucus carota HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
Oeu053237.1 Olea europaea HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
SalBow7G0546 Salvia bowleyana HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
Hund21170 Selenicereus undatus HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
Sc17g0005710 Simmondsia chinensis HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
Solyc07g055150.3 Solanum lycopersicum HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
Sopen07g027070 Solanum pennellii HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
SGA_v2.0_scaffold9G04836 Striga asiatica HOM05D000819 ORTHO05D000661 2.9e-09 65.1 29 93.1
CiPaw.10G059900 Carya illinoinensis HOM05D000819 ORTHO05D000661 3.8e-09 64.7 49 67.3
Dinv01706 Davidia involucrata HOM05D000819 ORTHO05D000661 3.8e-09 64.7 30 86.7
Nn1g04440 Nelumbo nucifera HOM05D000819 ORTHO05D000661 3.8e-09 64.7 29 96.6
Migut.M00267 Erythranthe guttata HOM05D000819 ORTHO05D000661 5.0e-09 64.3 58 56.9
TAR626G1665 Trochodendron aralioides HOM05D000819 ORTHO05D000661 5.0e-09 64.3 29 96.6
MSTRG.6786 Avicennia marina HOM05D000819 ORTHO05D000661 6.5e-09 63.9 29 89.7
Lsat_1_v5_gn_8_141080 Lactuca sativa HOM05D000819 ORTHO05D000661 6.5e-09 63.9 29 89.7
Lj8A100T101 Lonicera japonica HOM05D000819 ORTHO05D000661 6.5e-09 63.9 29 89.7
Nitab4.5_0006142g0040 Nicotiana tabacum HOM05D000819 ORTHO05D000661 6.5e-09 63.9 29 89.7
Os09g0316000 Oryza sativa ssp. japonica HOM05D000819 ORTHO05D000661 6.5e-09 63.9 29 93.1
Peaxi162Scf00469g00413 Petunia axillaris HOM05D000819 ORTHO05D000661 6.5e-09 63.9 29 89.7
Solyc10g007990.3 Solanum lycopersicum HOM05D000819 ORTHO05D000661 6.5e-09 63.9 29 89.7
Cfa000620 Carpinus fangiana HOM05D000819 ORTHO05D000661 8.5e-09 63.5 55 58.2
Nitab4.5_0000249g0190 Nicotiana tabacum HOM05D000819 ORTHO05D000661 8.5e-09 63.5 29 89.7
Nitab4.5_0004409g0040 Nicotiana tabacum HOM05D000819 ORTHO05D000661 8.5e-09 63.5 29 89.7
Phvul.005G094500 Phaseolus vulgaris HOM05D000819 ORTHO05D000661 8.5e-09 63.5 30 83.3
Sed0027538 Sechium edule HOM05D000819 ORTHO05D000661 8.5e-09 63.5 29 93.1
VMungo1080G1231 Vigna mungo HOM05D000819 ORTHO05D000661 8.5e-09 63.5 30 83.3
Ah.14g087070 Amaranthus hybridus HOM05D000819 ORTHO05D000661 1.1e-08 63.2 29 86.2
arahy.Tifrunner.gnm1.ann1.IA16C4 Arachis hypogaea HOM05D000819 ORTHO05D000661 1.1e-08 63.2 58 55.2
Ca_18869_v3 Cicer arietinum L. HOM05D000819 ORTHO05D000661 1.1e-08 63.2 29 89.7
Dinv07703 Davidia involucrata HOM05D000819 ORTHO05D000661 1.1e-08 63.2 29 86.2
Nitab4.5_0005828g0010 Nicotiana tabacum HOM05D000819 ORTHO05D000661 1.1e-08 63.2 29 89.7
Prupe.4G062500 Prunus persica HOM05D000819 ORTHO05D000661 1.1e-08 63.2 29 93.1
Rhsim04G0074700 Rhododendron simsii HOM05D000819 ORTHO05D000661 1.1e-08 63.2 30 83.3
VMungo1127G0114 Vigna mungo HOM05D000819 ORTHO05D000661 1.1e-08 63.2 52 57.7
AUR62027693 Chenopodium quinoa HOM05D000819 ORTHO05D000661 1.5e-08 62.8 29 89.7
AUR62031221 Chenopodium quinoa HOM05D000819 ORTHO05D000661 1.5e-08 62.8 29 89.7
CSS0029023 Camellia sinensis var. sinensis HOM05D000819 ORTHO05D000661 1.9e-08 62.4 48 62.5
CAN.G1716.3 Capsicum annuum HOM05D000819 ORTHO05D000661 1.9e-08 62.4 48 62.5
Cfa023599 Carpinus fangiana HOM05D000819 ORTHO05D000661 1.9e-08 62.4 30 80.0
Dinv16785 Davidia involucrata HOM05D000819 ORTHO05D000661 1.9e-08 62.4 29 89.7
Glyma.13G228800 Glycine max HOM05D000819 ORTHO05D000661 1.9e-08 62.4 29 93.1
Prupe.3G116600 Prunus persica HOM05D000819 ORTHO05D000661 1.9e-08 62.4 30 80.0
Sopen10g003860 Solanum pennellii HOM05D000819 ORTHO05D000661 1.9e-08 62.4 29 86.2
TWI14G1265 Tripterygium wilfordii HOM05D000819 ORTHO05D000661 1.9e-08 62.4 29 89.7
CAN.G1081.9 Capsicum annuum HOM05D000819 ORTHO05D000661 2.5e-08 62.0 29 86.2
COL.COLO4_33594 Corchorus olitorius HOM05D000819 ORTHO05D000661 2.5e-08 62.0 52 55.8
Eucgr.A01952 Eucalyptus grandis HOM05D000819 ORTHO05D000661 2.5e-08 62.0 29 86.2
FvH4_6g27560 Fragaria vesca HOM05D000819 ORTHO05D000661 2.5e-08 62.0 30 83.3
FAN02G0451 Fragaria x ananassa HOM05D000819 ORTHO05D000661 2.5e-08 62.0 30 83.3
FAN05G1730 Fragaria x ananassa HOM05D000819 ORTHO05D000661 2.5e-08 62.0 30 83.3
FAN09G3484 Fragaria x ananassa HOM05D000819 ORTHO05D000661 2.5e-08 62.0 30 83.3
FAN14G1635 Fragaria x ananassa HOM05D000819 ORTHO05D000661 2.5e-08 62.0 30 83.3
TAR624G1269 Trochodendron aralioides HOM05D000819 ORTHO05D000661 2.5e-08 62.0 29 89.7
CANSAT64G0884 Cannabis sativa HOM05D000819 ORTHO05D000661 3.2e-08 61.6 30 80.0
ClCG02G017880 Citrullus lanatus HOM05D000819 ORTHO05D000661 3.2e-08 61.6 30 83.3
CsaV3_6G015320 Cucumis sativus L. HOM05D000819 ORTHO05D000661 3.2e-08 61.6 30 83.3
MBI07_g09565_MAGBIO Magnolia biondii HOM05D000819 ORTHO05D000661 3.2e-08 61.6 30 83.3
MD17G1266100 Malus domestica HOM05D000819 ORTHO05D000661 3.2e-08 61.6 30 80.0
Nn1g09173 Nelumbo nucifera HOM05D000819 ORTHO05D000661 3.2e-08 61.6 28 89.3
Os04g0151900 Oryza sativa ssp. japonica HOM05D000819 ORTHO05D000661 3.2e-08 61.6 50 58.0
Atru.chr6.2775 Acer truncatum HOM05D000819 ORTHO05D000661 4.2e-08 61.2 29 86.2
arahy.Tifrunner.gnm1.ann1.27MJ8C Arachis hypogaea HOM05D000819 ORTHO05D000661 4.2e-08 61.2 34 70.6
Medtr4g080083 Medicago truncatula HOM05D000819 ORTHO05D000661 4.2e-08 61.2 28 89.3
Peaxi162Scf00229g01210 Petunia axillaris HOM05D000819 ORTHO05D000661 4.2e-08 61.2 48 64.6
Phvul.011G129215 Phaseolus vulgaris HOM05D000819 ORTHO05D000661 4.2e-08 61.2 29 86.2
GSVIVG01020720001 Vitis vinifera HOM05D000819 ORTHO05D000661 4.2e-08 61.2 31 77.4
arahy.Tifrunner.gnm1.ann1.62QAW3 Arachis hypogaea HOM05D000819 ORTHO05D000661 5.5e-08 60.8 34 70.6
Haze_13401 Corylus avellana HOM05D000819 ORTHO05D000661 5.5e-08 60.8 30 76.7
Glyma.12G211700 Glycine max HOM05D000819 ORTHO05D000661 5.5e-08 60.8 49 59.2
QL08p041996 Quercus lobata HOM05D000819 ORTHO05D000661 5.5e-08 60.8 29 82.8
Atru.chr10.1651 Acer truncatum HOM05D000819 ORTHO05D000661 7.2e-08 60.5 29 86.2
CSS0012614 Camellia sinensis var. sinensis HOM05D000819 ORTHO05D000661 7.2e-08 60.5 48 58.3
Cpa.g.sc912.2 Carica papaya HOM05D000819 ORTHO05D000661 7.2e-08 60.5 29 82.8
Ca_00443_v3 Cicer arietinum L. HOM05D000819 ORTHO05D000661 7.2e-08 60.5 30 90.0
Glyma.13G290000 Glycine max HOM05D000819 ORTHO05D000661 7.2e-08 60.5 49 57.1
HanXRQChr17g0559221 Helianthus annuus HOM05D000819 ORTHO05D000661 7.2e-08 60.5 30 83.3
Lj3g0016576 Lotus japonicus HOM05D000819 ORTHO05D000661 7.2e-08 60.5 29 82.8
SHI19486 Sapria himalayana HOM05D000819 ORTHO05D000661 7.2e-08 60.5 32 75.0
Sed0002666 Sechium edule HOM05D000819 ORTHO05D000661 7.2e-08 60.5 30 83.3
vmacro09215 Vaccinium macrocarpon HOM05D000819 ORTHO05D000661 7.2e-08 60.5 30 80.0
HPP92_021766 Vanilla planifolia HOM05D000819 ORTHO05D000661 7.2e-08 60.5 30 83.3
Glyma.06G276400 Glycine max HOM05D000819 ORTHO05D000661 9.4e-08 60.1 29 82.8
HanXRQChr16g0526081 Helianthus annuus HOM05D000819 ORTHO05D000661 9.4e-08 60.1 29 86.2
QL05p047523 Quercus lobata HOM05D000819 ORTHO05D000661 9.4e-08 60.1 49 63.3
Duzib147G1317 Durio zibethinus HOM05D000819 ORTHO05D000661 1.2e-07 59.7 29 86.2
Ca_01712_v3 Cicer arietinum L. HOM05D000819 ORTHO05D000661 1.6e-07 59.3 48 60.4
Glyma.12G128900 Glycine max HOM05D000819 ORTHO05D000661 1.6e-07 59.3 29 82.8
Lalb_Chr22g0356971 Lupinus albus HOM05D000819 ORTHO05D000661 1.6e-07 59.3 29 82.8
Thecc.01G152000 Theobroma cacao HOM05D000819 ORTHO05D000661 1.6e-07 59.3 29 86.2
Ciclev10016481m.g Citrus clementina HOM05D000819 ORTHO05D000661 2.1e-07 58.9 29 79.3
ECA234G2114 Erigeron canadensis HOM05D000819 ORTHO05D000661 2.1e-07 58.9 29 86.2
Gohir.A05G374400 Gossypium hirsutum HOM05D000819 ORTHO05D000661 2.7e-07 58.5 29 82.8
Gohir.A05G374900 Gossypium hirsutum HOM05D000819 ORTHO05D000661 2.7e-07 58.5 29 82.8
Gohir.D04G040800 Gossypium hirsutum HOM05D000819 ORTHO05D000661 2.7e-07 58.5 29 82.8
Gohir.D04G041200 Gossypium hirsutum HOM05D000819 ORTHO05D000661 2.7e-07 58.5 29 82.8
Gorai.012G046000 Gossypium raimondii HOM05D000819 ORTHO05D000661 2.7e-07 58.5 29 82.8
Gorai.012G046500 Gossypium raimondii HOM05D000819 ORTHO05D000661 2.7e-07 58.5 29 82.8
Hma1.2p1_0178F.1_g078730 Hydrangea macrophylla HOM05D000819 ORTHO05D000661 2.7e-07 58.5 30 83.3
unitig_0.g2035 Utricularia gibba HOM05D000819 ORTHO05D000661 2.7e-07 58.5 61 47.5
Lj3g0016699 Lotus japonicus HOM05D000819 ORTHO05D000661 3.6e-07 58.2 30 80.0
Rhsim06G0130500 Rhododendron simsii HOM05D000819 ORTHO05D000661 3.6e-07 58.2 53 49.1
Sed0026052 Sechium edule HOM05D000819 ORTHO05D000661 3.6e-07 58.2 30 80.0
TWI59G0605 Tripterygium wilfordii HOM05D000819 ORTHO05D000661 3.6e-07 58.2 28 85.7
CiPaw.03G194800 Carya illinoinensis HOM05D000819 ORTHO05D000661 4.7e-07 57.8 30 76.7
Medtr2g084225 Medicago truncatula HOM05D000819 ORTHO05D000661 4.7e-07 57.8 48 60.4
vmacro12383 Vaccinium macrocarpon HOM05D000819 ORTHO05D000661 4.7e-07 57.8 30 80.0
AT3G58670 Arabidopsis thaliana HOM05D000819 ORTHO05D000661 6.1e-07 57.4 53 56.6
BcaC07g40215 Brassica carinata HOM05D000819 ORTHO05D000661 6.1e-07 57.4 33 75.8
C08p34000 Brassica napus HOM05D000819 ORTHO05D000661 6.1e-07 57.4 33 75.8
Duzib187G0639 Durio zibethinus HOM05D000819 ORTHO05D000661 6.1e-07 57.4 54 57.4
Sp5g04180 Schrenkiella parvula HOM05D000819 ORTHO05D000661 6.1e-07 57.4 33 75.8
THA.LOC104802977 Tarenaya hassleriana HOM05D000819 ORTHO05D000661 8.0e-07 57.0 29 82.8
TPR.G21042 Trifolium pratense HOM05D000819 ORTHO05D000661 8.0e-07 57.0 48 60.4
Zm00001eb309740 Zea mays HOM05D000819 ORTHO05D000661 8.0e-07 57.0 30 76.7
Aa31LG10G13250 Aethionema arabicum HOM05D000819 ORTHO05D000661 1.0e-06 56.6 29 82.8
AL5G40430 Arabidopsis lyrata HOM05D000819 ORTHO05D000661 1.0e-06 56.6 53 56.6
Carub.0005s2546 Capsella rubella HOM05D000819 ORTHO05D000661 1.0e-06 56.6 48 60.4
Rhsim03G0051000 Rhododendron simsii HOM05D000819 ORTHO05D000661 1.0e-06 56.6 30 73.3
BolC8t50998H Brassica oleracea HOM05D000819 ORTHO05D000661 1.4e-06 56.2 52 57.7
TWI23G0882 Tripterygium wilfordii HOM05D000819 ORTHO05D000661 1.4e-06 56.2 28 82.1
A09p51200 Brassica napus HOM05D000819 ORTHO05D000661 1.8e-06 55.8 48 60.4
BraA09t40564Z Brassica rapa HOM05D000819 ORTHO05D000661 1.8e-06 55.8 48 60.4
Thhalv10006208m.g Eutrema salsugineum HOM05D000819 ORTHO05D000661 1.8e-06 55.8 48 60.4
BcaB02g07508 Brassica carinata HOM05D000819 ORTHO05D000661 2.3e-06 55.5 48 60.4
CiPaw.04G133500 Carya illinoinensis HOM05D000819 ORTHO05D000661 2.3e-06 55.5 30 73.3
HanXRQChr11g0348161 Helianthus annuus HOM05D000819 ORTHO05D000661 4.0e-06 54.7 29 72.4
Psat5g247120 Pisum sativum HOM05D000819 ORTHO05D000661 4.0e-06 54.7 48 58.3
CARHR169050 Cardamine hirsuta HOM05D000819 ORTHO05D000661 5.2e-06 54.3 48 58.3
DCAR_009774 Daucus carota HOM05D000819 ORTHO05D000661 5.2e-06 54.3 28 75.0
Lalb_Chr03g0029991 Lupinus albus HOM05D000819 ORTHO05D000661 5.2e-06 54.3 29 75.9
MSTRG.5929 Avicennia marina HOM05D000819 ORTHO05D000661 6.8e-06 53.9 29 72.4
Medtr2g016230 Medicago truncatula HOM05D000819 ORTHO05D000661 6.8e-06 53.9 32 78.1
RcHm_v2.0_Chr3g0496281 Rosa chinensis HOM05D000819 ORTHO05D000661 6.8e-06 53.9 40 52.5
THA.LOC104802262 Tarenaya hassleriana HOM05D000819 ORTHO05D000661 6.8e-06 53.9 29 75.9
VMungo1383G1821 Vigna mungo HOM05D000819 ORTHO05D000661 6.8e-06 53.9 62 40.3
Actinidia02704 Actinidia chinensis HOM05D000819 ORTHO05D000661 8.8e-06 53.5 67 40.3
A04p02430 Brassica napus HOM05D000819 ORTHO05D000661 8.8e-06 53.5 48 58.3
C04p33830 Brassica napus HOM05D000819 ORTHO05D000661 8.8e-06 53.5 48 58.3
BolC4t24950H Brassica oleracea HOM05D000819 ORTHO05D000661 8.8e-06 53.5 48 58.3
BraA04t15973Z Brassica rapa HOM05D000819 ORTHO05D000661 8.8e-06 53.5 48 58.3
FvH4_6g18200 Fragaria vesca HOM05D000819 ORTHO05D000661 8.8e-06 53.5 36 58.3
FAN02G1336 Fragaria x ananassa HOM05D000819 ORTHO05D000661 8.8e-06 53.5 36 58.3
FAN05G0985 Fragaria x ananassa HOM05D000819 ORTHO05D000661 8.8e-06 53.5 36 58.3
FAN05G2390 Fragaria x ananassa HOM05D000819 ORTHO05D000661 8.8e-06 53.5 36 58.3
FAN09G0246 Fragaria x ananassa HOM05D000819 ORTHO05D000661 8.8e-06 53.5 36 58.3
FAN14G5531 Fragaria x ananassa HOM05D000819 ORTHO05D000661 8.8e-06 53.5 36 58.3


User provided reference genes

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