Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.9e-235 818.1 413 100.0
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.1e-197 693.3 433 82.4
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.6e-98 363.2 472 51.1
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.0e-94 351.3 473 48.2
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.5e-93 347.4 465 47.3
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.3e-86 324.3 460 45.2
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 8.7e-86 321.6 452 46.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.5e-85 320.9 472 47.0
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 3.6e-84 316.2 459 45.3
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 4.8e-84 315.8 407 50.1
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.4e-83 314.3 460 45.0
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 1.4e-83 314.3 458 44.1
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 1.8e-83 313.9 442 46.8
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.1e-83 313.2 465 45.8
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 3.1e-83 313.2 457 45.7
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.0e-83 312.8 431 44.8
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 5.3e-83 312.4 447 46.1
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 6.4e-81 305.4 430 45.6
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 6.4e-81 305.4 454 44.3
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 8.4e-81 305.1 445 43.4
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.4e-80 304.3 473 45.9
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.9e-80 303.9 446 44.8
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.9e-80 303.9 445 43.8
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.2e-79 301.2 430 47.0
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 2.1e-79 300.4 451 43.7
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 3.5e-79 299.7 447 43.6
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 7.9e-79 298.5 450 42.0
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.0e-78 298.1 450 42.9
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.0e-78 298.1 450 42.9
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.0e-78 298.1 450 42.9
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.3e-78 297.7 434 44.9
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.3e-78 297.7 482 41.1
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.7e-78 297.4 450 43.8
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.7e-78 297.4 460 43.7
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.3e-78 297.0 459 43.8
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.1e-78 295.8 450 42.7
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 6.6e-78 295.4 465 43.0
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.9e-77 293.9 450 42.7
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 3.3e-77 293.1 454 42.5
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 4.3e-77 292.7 453 43.0
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 5.6e-77 292.4 423 46.1
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 5.6e-77 292.4 403 47.4
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 7.4e-77 292.0 417 46.0
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.4e-77 292.0 450 42.4
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.6e-76 290.8 458 43.7
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.6e-76 290.8 478 43.7
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.6e-76 290.8 415 46.5
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 3.6e-76 289.7 449 44.1
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 4.8e-76 289.3 454 44.9
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 4.8e-76 289.3 473 41.9
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 6.2e-76 288.9 394 46.7
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 8.1e-76 288.5 398 46.7
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.4e-75 287.0 462 43.1
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.4e-75 287.0 455 42.0
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.5e-74 284.3 412 44.7
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.4e-74 283.1 418 44.3
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.4e-74 283.1 368 48.9
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 4.5e-74 282.7 394 45.4
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 5.8e-74 282.3 307 55.4
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 5.8e-74 282.3 424 44.6
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 7.6e-74 282.0 400 45.5
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 7.6e-74 282.0 411 41.4
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.7e-73 280.8 400 43.2
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.9e-72 277.3 453 41.1
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 2.4e-72 276.9 355 49.3
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.2e-72 276.6 419 43.4
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 4.2e-72 276.2 402 44.5
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 7.1e-72 275.4 408 43.4
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 7.1e-72 275.4 401 43.1
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 1.2e-71 274.6 350 49.1
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.6e-71 274.2 412 43.9
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 6.0e-71 272.3 415 44.1
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 7.9e-71 271.9 412 43.4
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.8e-70 270.8 446 42.6
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.9e-70 269.6 390 46.9
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 3.9e-70 269.6 287 53.3
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.5e-69 267.7 378 45.2
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 4.3e-69 266.2 411 43.1
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 9.6e-69 265.0 468 40.4
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.3e-68 264.6 415 42.4
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 3.7e-68 263.1 434 41.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 3.7e-68 263.1 415 43.1
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 8.1e-68 261.9 402 43.0
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.8e-67 260.8 251 59.8
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.4e-67 260.4 372 47.6
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 1.5e-66 257.7 344 45.6
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 2.6e-66 256.9 343 46.6
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 4.5e-66 256.1 299 50.2
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 5.8e-66 255.8 400 43.5
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.0e-65 255.0 366 42.9
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.8e-65 253.1 351 45.6
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 3.8e-65 253.1 337 46.0
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 3.8e-65 253.1 392 41.3
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 8.4e-65 251.9 327 46.8
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 8.4e-65 251.9 347 46.7
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 5.5e-64 249.2 347 45.2
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.2e-63 248.1 439 37.8
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.6e-63 247.7 354 44.4
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 7.9e-63 245.4 219 59.8
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.8e-62 244.2 303 48.8
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 3.9e-62 243.0 473 39.1
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 6.7e-62 242.3 339 44.0
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 8.7e-62 241.9 219 58.4
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 2.5e-61 240.4 354 42.7
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 3.3e-61 240.0 354 42.7
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 4.8e-60 236.1 332 46.7
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 8.2e-60 235.3 342 43.6
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.1e-59 233.4 251 55.8
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 5.3e-59 232.6 294 50.7
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 3.4e-58 229.9 361 43.8
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 2.3e-54 217.2 573 33.9
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 5.1e-54 216.1 249 47.0
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.1e-51 208.4 260 48.8
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.4e-51 208.0 246 46.3
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.8e-51 207.6 249 44.6
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.9e-48 197.6 340 40.0
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 1.3e-44 184.9 216 46.3
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 3.9e-38 163.3 364 36.3
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 3.9e-38 163.3 159 50.9
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.6e-37 160.6 204 43.1
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 1.7e-36 157.9 108 73.1
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.6e-34 151.4 247 36.8
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.0e-30 138.7 322 35.1
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.2e-30 136.3 103 64.1
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.5e-29 134.8 296 36.1
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.6e-29 134.0 342 32.5
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.8e-28 130.6 191 36.1
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.1e-27 127.1 335 33.7
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.2e-25 120.9 354 32.5
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.9e-24 117.9 106 45.3
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.1e-23 112.8 85 68.2
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.2e-21 108.6 302 32.5
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 7.7e-18 95.9 266 31.2
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.7e-17 94.7 294 30.6
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.1e-15 87.8 68 66.2
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 7.3e-08 62.8 73 47.9


User provided reference genes

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