Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.3e-40 167.9 84 100.0
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 2.0e-37 158.7 84 94.0
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.0e-25 119.8 77 77.9
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.5e-24 115.9 77 72.7
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.5e-24 115.9 77 72.7
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 1.5e-24 115.9 77 70.1
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 2.5e-24 115.2 77 71.4
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 3.3e-24 114.8 77 72.7
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.2e-23 112.8 77 70.1
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.8e-23 111.7 79 70.9
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 6.2e-23 110.5 77 71.4
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 6.2e-23 110.5 73 71.2
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.1e-22 109.8 77 68.8
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.4e-22 109.4 77 68.8
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.4e-22 109.4 77 67.5
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 2.3e-22 108.6 77 70.1
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 3.1e-22 108.2 65 76.9
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 5.2e-22 107.5 77 66.2
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 5.2e-22 107.5 77 68.8
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 1.2e-21 106.3 76 69.7
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 2.0e-21 105.5 79 67.1
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.6e-21 105.1 68 70.6
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 3.4e-21 104.8 61 80.3
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 5.8e-21 104.0 77 70.1
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 5.8e-21 104.0 61 80.3
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.3e-20 102.8 77 68.8
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.7e-20 102.4 77 70.1
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.7e-20 102.4 77 70.1
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 1.7e-20 102.4 65 73.8
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 2.2e-20 102.1 58 82.8
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 2.2e-20 102.1 72 69.4
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 6.4e-20 100.5 67 73.1
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 8.3e-20 100.1 72 68.1
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 8.3e-20 100.1 61 78.7
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 8.3e-20 100.1 61 77.0
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 8.3e-20 100.1 68 72.1
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.1e-19 99.8 69 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.9e-19 99.0 61 78.7
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.9e-19 99.0 67 73.1
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 1.9e-19 99.0 77 67.5
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.9e-19 99.0 71 67.6
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 2.4e-19 98.6 77 67.5
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 2.4e-19 98.6 76 64.5
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 2.4e-19 98.6 60 76.7
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 4.1e-19 97.8 71 69.0
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 4.1e-19 97.8 75 65.3
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 4.1e-19 97.8 69 69.6
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 7.1e-19 97.1 60 70.0
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 9.2e-19 96.7 77 66.2
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 9.2e-19 96.7 77 63.6
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 9.2e-19 96.7 68 69.1
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 1.2e-18 96.3 68 67.6
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.2e-18 96.3 64 71.9
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 1.2e-18 96.3 71 64.8
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.6e-18 95.9 68 69.1
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.6e-18 95.9 61 72.1
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 2.1e-18 95.5 61 73.8
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 2.1e-18 95.5 76 64.5
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 4.6e-18 94.4 68 67.6
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 4.6e-18 94.4 68 66.2
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 4.6e-18 94.4 52 86.5
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 7.8e-18 93.6 64 68.8
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 7.8e-18 93.6 64 68.8
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 7.8e-18 93.6 72 65.3
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 7.8e-18 93.6 68 67.6
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 7.8e-18 93.6 68 67.6
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 2.3e-17 92.0 68 69.1
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 3.0e-17 91.7 68 66.2
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 3.0e-17 91.7 68 66.2
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 3.9e-17 91.3 60 71.7
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 3.9e-17 91.3 68 67.6
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.9e-17 91.3 71 66.2
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 5.1e-17 90.9 65 67.7
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 6.6e-17 90.5 68 67.6
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 6.6e-17 90.5 70 65.7
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 8.6e-17 90.1 63 69.8
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 8.6e-17 90.1 68 67.6
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 8.6e-17 90.1 72 62.5
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.1e-16 89.7 68 67.6
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 5.6e-16 87.4 77 61.0
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 9.5e-16 86.7 75 57.3
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.1e-15 85.5 62 69.4
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 4.7e-15 84.3 61 68.9
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 6.2e-15 84.0 59 71.2
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 6.2e-15 84.0 55 72.7
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 8.1e-15 83.6 59 71.2
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 8.1e-15 83.6 59 71.2
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.4e-14 82.8 75 54.7
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.4e-14 82.8 75 54.7
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.4e-14 82.8 75 54.7
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.8e-14 82.4 64 60.9
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 2.4e-14 82.0 75 54.7
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 3.1e-14 81.6 65 66.2
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 3.1e-14 81.6 55 70.9
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 8.9e-14 80.1 65 61.5
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.2e-13 79.7 70 60.0
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.5e-13 79.3 61 60.7
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 7.6e-13 77.0 66 59.1
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 9.9e-13 76.6 74 55.4
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.1e-11 73.2 43 79.1
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 7.1e-11 70.5 44 77.3
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 6.9e-06 53.9 38 68.4


User provided reference genes

Program Settings