Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0074 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 0.0e+00 1552.0 936 100.0
CDE06G1109 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 0.0e+00 1253.4 970 74.7
Aqoxy1G01047 Aquilegia oxysepala HOM05D003470 ORTHO05D004157 1.3e-113 415.2 669 42.3
PSO339G3515 Papaver somniferum HOM05D003470 ORTHO05D004157 7.2e-112 409.5 670 41.8
PSO063G0006 Papaver somniferum HOM05D003470 ORTHO05D004157 6.3e-108 396.4 916 35.2
TAR623G0591 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.6e-103 381.7 669 40.7
Nn6g35185 Nelumbo nucifera HOM05D003470 ORTHO05D004157 3.6e-103 380.6 687 40.9
Nn2g13883 Nelumbo nucifera HOM05D003470 ORTHO05D004157 6.5e-97 359.8 681 39.2
TAR633G0390 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.9e-96 358.2 680 39.1
TAR369G0117 Trochodendron aralioides HOM05D003470 ORTHO05D004157 6.3e-92 343.2 632 39.9
Duzib106G0260 Durio zibethinus HOM05D003470 ORTHO05D004157 7.2e-88 329.7 665 37.3
Duzib114G1051 Durio zibethinus HOM05D003470 ORTHO05D004157 1.8e-86 325.1 669 36.5
Gohir.A10G200100 Gossypium hirsutum HOM05D003470 ORTHO05D004157 4.0e-86 323.9 671 37.4
MD14G1098000 Malus domestica HOM05D003470 ORTHO05D004157 1.5e-85 322.0 955 31.2
Ciclev10033678m.g Citrus clementina HOM05D003470 ORTHO05D004157 5.7e-85 320.1 672 35.9
Thecc.10G090100 Theobroma cacao HOM05D003470 ORTHO05D004157 1.4e-83 315.5 678 36.1
Manes.10G053000 Manihot esculenta HOM05D003470 ORTHO05D004157 2.2e-81 308.1 666 35.6
AUR62035493 Chenopodium quinoa HOM05D003470 ORTHO05D004157 1.2e-79 302.4 670 35.2
DCAR_006389 Daucus carota HOM05D003470 ORTHO05D004157 4.7e-79 300.4 763 33.4
ATR0043G047 Amborella trichopoda HOM05D003470 ORTHO05D004157 6.1e-79 300.1 678 37.8
COL.COLO4_32876 Corchorus olitorius HOM05D003470 ORTHO05D004157 4.4e-77 293.9 669 33.8
Sabra08G0020000 Salix brachista HOM05D003470 ORTHO05D004157 7.5e-77 293.1 813 32.8
Dinv37350 Davidia involucrata HOM05D003470 ORTHO05D004157 3.7e-76 290.8 777 34.2
Haze_19469 Corylus avellana HOM05D003470 ORTHO05D004157 4.8e-76 290.4 681 34.5
CSS0002390 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 8.3e-76 289.7 673 34.3
Potri.008G029800 Populus trichocarpa HOM05D003470 ORTHO05D004157 1.4e-75 288.9 657 34.6
GSVIVG01033709001 Vitis vinifera HOM05D003470 ORTHO05D004157 5.9e-74 283.5 676 34.5
Actinidia18557 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.7e-73 282.0 670 33.9
Gorai.011G233700 Gossypium raimondii HOM05D003470 ORTHO05D004157 2.9e-73 281.2 671 35.2
MD12G1103600 Malus domestica HOM05D003470 ORTHO05D004157 5.0e-73 280.4 957 30.6
TWI38G0957 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 5.0e-73 280.4 670 32.5
Prupe.7G123700 Prunus persica HOM05D003470 ORTHO05D004157 8.6e-73 279.6 953 30.6
Atru.chr8.1716 Acer truncatum HOM05D003470 ORTHO05D004157 7.2e-72 276.6 671 36.2
CiPaw.10G002200 Carya illinoinensis HOM05D003470 ORTHO05D004157 4.7e-71 273.9 671 32.9
Gohir.D10G208000 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.8e-70 271.9 671 34.7
Zm00001eb404310 Zea mays HOM05D003470 ORTHO05D004157 1.8e-70 271.9 657 33.0
RcHm_v2.0_Chr3g0471201 Rosa chinensis HOM05D003470 ORTHO05D004157 1.7e-68 265.4 667 34.5
Eucgr.G02735 Eucalyptus grandis HOM05D003470 ORTHO05D004157 2.8e-68 264.6 679 34.0
GSVIVG01016161001 Vitis vinifera HOM05D003470 ORTHO05D004157 1.8e-67 261.9 664 33.6
CSS0012208 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 9.2e-67 259.6 969 28.3
TWI74G0295 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 5.9e-66 256.9 869 28.8
ECA238G1102 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.7e-65 255.4 856 30.0
Sc20g0001480 Simmondsia chinensis HOM05D003470 ORTHO05D004157 3.9e-65 254.2 670 32.1
CSS0007947 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 3.3e-64 251.1 969 28.1
Haze_16780 Corylus avellana HOM05D003470 ORTHO05D004157 3.6e-63 247.7 462 37.9
QL07p041535 Quercus lobata HOM05D003470 ORTHO05D004157 1.5e-61 242.3 773 30.1
Nitab4.5_0004731g0020 Nicotiana tabacum HOM05D003470 ORTHO05D004157 5.8e-61 240.4 668 30.5
Hund06764 Selenicereus undatus HOM05D003470 ORTHO05D004157 5.8e-61 240.4 603 33.7
CiPaw.09G004500 Carya illinoinensis HOM05D003470 ORTHO05D004157 1.3e-60 239.2 792 31.7
Nitab4.5_0003906g0030 Nicotiana tabacum HOM05D003470 ORTHO05D004157 3.5e-58 231.1 654 32.0
Glyma.10G062800 Glycine max HOM05D003470 ORTHO05D004157 7.8e-58 229.9 671 31.6
Sabra06G0094700 Salix brachista HOM05D003470 ORTHO05D004157 1.9e-56 225.3 671 30.4
Sopen09g003360 Solanum pennellii HOM05D003470 ORTHO05D004157 3.3e-56 224.6 646 30.0
Solyc09g008530.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 2.1e-55 221.9 646 30.0
Zm00001eb000590 Zea mays HOM05D003470 ORTHO05D004157 2.8e-55 221.5 660 30.5
ClCG08G007930 Citrullus lanatus HOM05D003470 ORTHO05D004157 6.2e-55 220.3 482 34.0
FAN05G3818 Fragaria x ananassa HOM05D003470 ORTHO05D004157 2.3e-54 218.4 696 31.9
Sopen11g003760 Solanum pennellii HOM05D003470 ORTHO05D004157 2.3e-54 218.4 777 29.3
Nitab4.5_0000255g0010 Nicotiana tabacum HOM05D003470 ORTHO05D004157 5.2e-54 217.2 492 33.5
ECA233G4972 Erigeron canadensis HOM05D003470 ORTHO05D004157 6.8e-54 216.9 669 36.3
PGSC0003DMG400003903 Solanum tuberosum HOM05D003470 ORTHO05D004157 1.2e-53 216.1 656 32.8
Thecc.05G074600 Theobroma cacao HOM05D003470 ORTHO05D004157 1.2e-53 216.1 621 29.5
Solyc11g007900.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 1.5e-53 215.7 779 28.6
Glyma.10G198700 Glycine max HOM05D003470 ORTHO05D004157 4.9e-52 210.7 441 35.1
CDE02G3590 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 6.4e-52 210.3 477 35.2
FvH4_6g17113 Fragaria vesca HOM05D003470 ORTHO05D004157 8.3e-52 209.9 696 31.3
Haze_16781 Corylus avellana HOM05D003470 ORTHO05D004157 3.2e-51 208.0 644 30.4
CAN.G135.27 Capsicum annuum HOM05D003470 ORTHO05D004157 9.2e-51 206.5 673 29.6
HanXRQChr08g0218281 Helianthus annuus HOM05D003470 ORTHO05D004157 1.2e-50 206.1 658 29.3
Ca_10457_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 1.3e-49 202.6 584 29.6
FAN14G5641 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.7e-49 202.2 696 30.9
HanXRQChr14g0456131 Helianthus annuus HOM05D003470 ORTHO05D004157 1.7e-49 202.2 661 30.7
Duzib128G1576 Durio zibethinus HOM05D003470 ORTHO05D004157 3.0e-49 201.4 638 29.0
FAN05G4328 Fragaria x ananassa HOM05D003470 ORTHO05D004157 3.0e-49 201.4 696 30.9
Potri.006G120400 Populus trichocarpa HOM05D003470 ORTHO05D004157 3.0e-49 201.4 667 29.7
Manes.08G016800 Manihot esculenta HOM05D003470 ORTHO05D004157 3.9e-49 201.1 675 31.9
Lsat_1_v5_gn_2_103301 Lactuca sativa HOM05D003470 ORTHO05D004157 3.3e-48 198.0 671 29.1
Medtr1g090807 Medicago truncatula HOM05D003470 ORTHO05D004157 4.3e-48 197.6 448 33.3
FAN09G0366 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.2e-47 196.1 688 30.5
Phvul.007G226600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 1.2e-47 196.1 747 28.5
CsaV3_3G036530 Cucumis sativus L. HOM05D003470 ORTHO05D004157 1.6e-47 195.7 678 29.2
HPP92_008497 Vanilla planifolia HOM05D003470 ORTHO05D004157 1.6e-47 195.7 566 31.8
Rhsim03G0087000 Rhododendron simsii HOM05D003470 ORTHO05D004157 3.6e-47 194.5 663 30.2
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 4.7e-47 194.1 749 27.6
Psat6g173600 Pisum sativum HOM05D003470 ORTHO05D004157 1.4e-46 192.6 461 32.3
vmacro07200 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 1.4e-46 192.6 442 36.0
Gohir.A09G143900 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.8e-46 192.2 910 27.3
Cc06_g04710 Coffea canephora HOM05D003470 ORTHO05D004157 5.2e-46 190.7 658 28.1
MELO3C009401.2 Cucumis melo HOM05D003470 ORTHO05D004157 5.2e-46 190.7 679 28.1
Nitab4.5_0000593g0330 Nicotiana tabacum HOM05D003470 ORTHO05D004157 3.4e-45 188.0 774 26.9
Peaxi162Scf00138g00213 Petunia axillaris HOM05D003470 ORTHO05D004157 9.9e-45 186.4 675 32.1
Sed0009504 Sechium edule HOM05D003470 ORTHO05D004157 1.3e-44 186.0 487 31.0
Rhsim03G0111500 Rhododendron simsii HOM05D003470 ORTHO05D004157 1.7e-44 185.7 844 26.4
Sc06g0002130 Simmondsia chinensis HOM05D003470 ORTHO05D004157 4.9e-44 184.1 580 29.0
Lj5g0020068 Lotus japonicus HOM05D003470 ORTHO05D004157 1.1e-43 183.0 778 27.4
TPR.G37812 Trifolium pratense HOM05D003470 ORTHO05D004157 1.4e-43 182.6 451 31.5
Phvul.007G145600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 7.1e-43 180.3 478 29.9
PGR142G1299 Punica granatum HOM05D003470 ORTHO05D004157 7.1e-43 180.3 666 29.3
VMungo0720G1037 Vigna mungo HOM05D003470 ORTHO05D004157 1.2e-42 179.5 478 29.3
MSTRG.19203 Avicennia marina HOM05D003470 ORTHO05D004157 1.7e-41 175.6 660 27.6
PSO478G4813 Papaver somniferum HOM05D003470 ORTHO05D004157 2.5e-40 171.8 424 32.1
SalBow3G0781 Salvia bowleyana HOM05D003470 ORTHO05D004157 1.6e-39 169.1 619 27.3
Glyma.13G147300 Glycine max HOM05D003470 ORTHO05D004157 3.6e-39 167.9 670 27.5
Atru.chr12.915 Acer truncatum HOM05D003470 ORTHO05D004157 1.1e-38 166.4 347 36.6
Zm00001eb391920 Zea mays HOM05D003470 ORTHO05D004157 3.1e-38 164.9 797 23.5
Actinidia26639 Actinidia chinensis HOM05D003470 ORTHO05D004157 2.0e-37 162.2 729 27.2
Ca_11537_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 3.4e-37 161.4 631 26.8
Peaxi162Scf00543g00019 Petunia axillaris HOM05D003470 ORTHO05D004157 4.4e-37 161.0 498 28.5
Gorai.006G160300 Gossypium raimondii HOM05D003470 ORTHO05D004157 2.2e-36 158.7 702 25.9
TPR.G22446 Trifolium pratense HOM05D003470 ORTHO05D004157 2.9e-36 158.3 686 26.2
Lj3C994T12 Lonicera japonica HOM05D003470 ORTHO05D004157 8.4e-36 156.8 673 27.6
Actinidia28929 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.1e-35 156.4 512 31.2
Duzib093G1940 Durio zibethinus HOM05D003470 ORTHO05D004157 4.2e-35 154.5 668 24.7
Migut.J00469 Erythranthe guttata HOM05D003470 ORTHO05D004157 6.0e-34 150.6 610 27.5
Lsat_1_v5_gn_6_28040 Lactuca sativa HOM05D003470 ORTHO05D004157 1.0e-33 149.8 677 26.7
Lalb_Chr02g0151131 Lupinus albus HOM05D003470 ORTHO05D004157 1.0e-33 149.8 532 28.4
Cpa.g.sc5.136 Carica papaya HOM05D003470 ORTHO05D004157 1.3e-33 149.4 577 27.6
Cpa.g.sc53.171 Carica papaya HOM05D003470 ORTHO05D004157 5.6e-32 144.1 641 26.5
SEGI_27097 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 7.3e-32 143.7 637 25.4
Oeu026700.1 Olea europaea HOM05D003470 ORTHO05D004157 2.1e-31 142.1 778 26.1
Medtr1g062200 Medicago truncatula HOM05D003470 ORTHO05D004157 5.3e-30 137.5 636 26.4
vmacro07330 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 2.2e-28 132.1 668 26.5
CANSAT78G0551 Cannabis sativa HOM05D003470 ORTHO05D004157 4.9e-28 131.0 683 26.5
Lj5g0018822 Lotus japonicus HOM05D003470 ORTHO05D004157 4.9e-28 131.0 459 26.8
CDE02G1862 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 7.1e-27 127.1 149 52.3
Dinv31268 Davidia involucrata HOM05D003470 ORTHO05D004157 6.0e-26 124.0 316 32.6
ECA233G0686 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.7e-25 122.5 642 25.4
Ca_11528_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 1.9e-24 119.0 681 26.1
Gohir.D09G139850 Gossypium hirsutum HOM05D003470 ORTHO05D004157 2.5e-24 118.6 487 27.7
COL.COLO4_22242 Corchorus olitorius HOM05D003470 ORTHO05D004157 3.6e-23 114.8 441 27.0
AUR62019445 Chenopodium quinoa HOM05D002464 ORTHO05D002530 8.4e-20 103.6 115 49.6
SalBow6G0046 Salvia bowleyana HOM05D003470 ORTHO05D004157 8.4e-20 103.6 496 25.8
AagrBONN_evm.TU.Sc2ySwM_344.3028 Anthoceros agrestis HOM05D003470 ORTHO05D004157 2.1e-18 99.0 500 23.8
ClCG10G019700 Citrullus lanatus HOM05D003470 ORTHO05D004157 3.5e-18 98.2 676 23.8
Migut.F01673 Erythranthe guttata HOM05D003470 ORTHO05D004157 4.6e-18 97.8 316 28.5
Sed0013053 Sechium edule HOM05D003470 ORTHO05D004157 2.3e-17 95.5 601 23.3
CAN.G1038.4 Capsicum annuum HOM05D003470 ORTHO05D004157 3.9e-17 94.7 715 23.1
SEGI_39816 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 3.9e-17 94.7 693 21.5
Lsat_1_v5_gn_8_17720 Lactuca sativa HOM05D003470 ORTHO05D004157 6.7e-17 94.0 324 26.9
Eucgr.A01602 Eucalyptus grandis HOM05D003470 ORTHO05D004157 4.3e-16 91.3 901 21.2
Atru.chr12.916 Acer truncatum HOM05D003470 ORTHO05D004157 9.6e-16 90.1 158 37.3
Haze_16782 Corylus avellana HOM05D003470 ORTHO05D004157 9.6e-16 90.1 109 51.4
arahy.Tifrunner.gnm1.ann1.8W3QW7 Arachis hypogaea HOM05D003470 ORTHO05D004157 4.8e-15 87.8 569 25.8
arahy.Tifrunner.gnm1.ann1.FKX1H2 Arachis hypogaea HOM05D003470 ORTHO05D004157 4.8e-15 87.8 569 25.8
Dinv31267 Davidia involucrata HOM05D003470 ORTHO05D004157 5.3e-14 84.3 137 40.1
Os10g0547000 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 6.9e-14 84.0 543 25.2
SMO301G0074 Selaginella moellendorffii HOM05D004450 ORTHO05D004157 1.2e-13 83.2 699 23.3
VMungo0720G2647 Vigna mungo HOM05D003470 ORTHO05D000001 1.2e-13 83.2 676 29.3
Lj3A935T49 Lonicera japonica HOM05D003470 ORTHO05D004157 4.5e-13 81.3 326 29.4
Thecc.10G089600 Theobroma cacao HOM05D003470 ORTHO05D022439 1.3e-12 79.7 280 30.7
HanXRQChr13g0400491 Helianthus annuus HOM05D003470 ORTHO05D004157 3.8e-12 78.2 332 27.1
Actinidia28930 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.1e-11 76.6 95 45.3
Sed0006633 Sechium edule HOM05D003470 ORTHO05D004157 1.2e-10 73.2 595 21.0
SGA_v2.0_scaffold40G15455 Striga asiatica HOM05D003470 ORTHO05D003317 6.0e-10 70.9 482 32.0
QL12p036511 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-09 69.7 119 38.7
QL02p062649 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-09 67.8 144 37.5
arahy.Tifrunner.gnm1.ann1.08YI9Q Arachis hypogaea HOM05D003470 ORTHO05D004157 6.7e-09 67.4 239 28.0
SEGI_03196 Sequoiadendron giganteum HOM05D004450 ORTHO05D022914 1.1e-08 66.6 101 40.6
Gorai.011G233900 Gossypium raimondii HOM05D003470 ORTHO05D022439 1.5e-08 66.2 193 32.1
SEGI_32626 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 9.6e-08 63.5 50 62.0
Gohir.D10G208200 Gossypium hirsutum HOM05D003470 ORTHO05D022439 1.3e-07 63.2 277 27.4
COL.COLO4_32886 Corchorus olitorius HOM05D003470 ORTHO05D022439 2.8e-07 62.0 74 41.9
Pp3c17_1340 Physcomitrium patens HOM05D001888 ORTHO05D001842 2.8e-07 62.0 692 21.8
Gohir.A10G200300 Gossypium hirsutum HOM05D003470 ORTHO05D022439 8.2e-07 60.5 391 24.3
HanXRQChr07g0186251 Helianthus annuus HOM05D003470 ORTHO05D004157 8.2e-07 60.5 463 23.5
unitig_27.g25387 Utricularia gibba HOM05D003470 ORTHO05D004157 4.0e-06 58.2 310 27.1
CSS0015865 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 9.0e-06 57.0 103 35.0
CSS0047020 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 9.0e-06 57.0 103 35.0
Os03g0107400 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 9.0e-06 57.0 87 36.8
Psat6g076760 Pisum sativum HOM05D003470 ORTHO05D004157 9.0e-06 57.0 570 22.8


User provided reference genes

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