Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.8e-166 587.0 290 100.0
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.2e-160 568.9 290 96.6
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.8e-131 471.5 286 77.6
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.4e-130 469.9 289 77.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.8e-130 469.5 286 78.3
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.1e-130 468.8 289 76.1
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 5.3e-130 468.0 289 76.5
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 6.9e-130 467.6 285 77.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.3e-128 463.4 286 77.3
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 6.4e-128 461.1 289 77.2
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.4e-127 459.9 289 77.5
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 3.2e-127 458.8 289 74.7
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 4.2e-127 458.4 287 76.0
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 9.3e-127 457.2 289 76.1
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 2.1e-126 456.1 289 75.1
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.7e-126 455.7 289 74.4
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 4.6e-126 454.9 289 74.7
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 7.9e-126 454.1 289 75.1
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 7.9e-126 454.1 289 73.7
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 7.9e-126 454.1 289 75.1
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.0e-125 453.8 289 73.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.0e-125 453.8 289 74.7
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.0e-125 453.8 289 74.4
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.3e-125 453.4 289 74.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.3e-125 453.4 289 74.0
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.3e-125 453.4 289 74.7
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.7e-125 453.0 289 74.0
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.3e-125 452.6 289 74.0
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.3e-125 452.6 289 74.4
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.3e-125 452.6 289 74.4
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 2.3e-125 452.6 289 74.4
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.3e-125 452.6 289 76.5
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 3.0e-125 452.2 289 74.4
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 5.1e-125 451.4 274 77.0
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 5.1e-125 451.4 289 74.0
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 6.6e-125 451.1 289 74.4
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 6.6e-125 451.1 289 74.0
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 8.7e-125 450.7 289 73.7
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 8.7e-125 450.7 289 73.4
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 1.1e-124 450.3 289 73.4
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.1e-124 450.3 289 74.4
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.9e-124 449.5 289 72.7
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.3e-124 448.7 289 72.7
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 4.3e-124 448.4 289 74.7
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 9.6e-124 447.2 289 73.7
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.3e-123 446.8 289 73.4
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.3e-123 446.8 289 71.6
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.6e-123 446.4 289 74.4
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.6e-123 446.4 289 72.7
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 2.1e-123 446.0 289 72.7
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 2.8e-123 445.7 289 72.3
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.8e-123 445.7 289 72.3
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 4.8e-123 444.9 289 73.7
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 4.8e-123 444.9 289 73.7
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 4.8e-123 444.9 289 72.7
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 4.8e-123 444.9 289 71.6
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 6.2e-123 444.5 300 71.7
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 6.2e-123 444.5 289 73.7
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 6.2e-123 444.5 289 73.7
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 8.1e-123 444.1 289 72.0
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 8.1e-123 444.1 289 73.0
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 8.1e-123 444.1 289 72.7
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.1e-122 443.7 289 72.7
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.4e-122 443.4 289 73.0
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.4e-122 443.4 289 73.0
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.8e-122 443.0 289 71.3
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 3.1e-122 442.2 289 71.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.1e-122 442.2 289 70.9
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.3e-122 441.4 289 70.9
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 5.3e-122 441.4 289 70.9
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 5.3e-122 441.4 289 72.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 5.3e-122 441.4 289 73.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 6.9e-122 441.0 289 71.6
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 6.9e-122 441.0 289 71.3
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 6.9e-122 441.0 289 70.9
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 6.9e-122 441.0 289 73.7
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 9.0e-122 440.7 289 71.3
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.2e-121 440.3 289 71.3
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.2e-121 440.3 289 72.3
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.2e-121 440.3 289 73.0
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-121 439.9 289 71.3
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.5e-121 439.9 289 72.7
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.0e-121 439.5 300 70.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.4e-121 438.7 289 70.6
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 3.4e-121 438.7 289 70.2
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.5e-121 438.3 289 71.3
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 4.5e-121 438.3 289 70.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 5.8e-121 438.0 289 70.9
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.6e-121 437.6 289 69.9
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 9.9e-121 437.2 289 70.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 9.9e-121 437.2 289 69.9
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.3e-120 436.8 289 71.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.7e-120 436.4 289 69.6
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.7e-120 436.4 346 63.3
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 2.2e-120 436.0 289 72.7
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 2.2e-120 436.0 289 71.6
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 3.8e-120 435.3 289 72.3
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 3.8e-120 435.3 289 71.6
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 4.9e-120 434.9 289 71.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 8.4e-120 434.1 287 70.7
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 8.4e-120 434.1 289 71.6
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.4e-119 433.3 289 71.6
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.9e-119 433.0 289 72.0
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.4e-119 432.6 289 70.9
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 5.5e-119 431.4 289 71.3
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.1e-118 429.5 289 70.6
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.2e-113 413.7 273 71.1
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.7e-112 409.8 275 69.5
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.4e-111 406.8 284 68.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.6e-107 393.3 289 65.7
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.8e-106 389.8 242 74.0
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.2e-104 382.9 283 64.3
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 5.7e-100 368.2 276 64.9
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 9.7e-100 367.5 277 63.9
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.2e-99 366.3 291 63.9
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 8.2e-99 364.4 289 63.3
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 8.5e-96 354.4 277 62.8
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.7e-94 349.4 231 70.6
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.7e-86 322.8 223 68.6
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.0e-85 320.9 289 56.4
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.4e-85 320.5 191 76.4
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 8.2e-83 311.2 191 74.3
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.0e-80 304.3 211 70.6
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.7e-80 303.5 237 63.7
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.8e-77 293.5 286 55.6
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 2.3e-77 293.1 289 54.3
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.3e-77 293.1 206 67.5
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.8e-75 286.2 277 53.4
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.9e-72 276.2 196 67.3
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 6.1e-70 268.5 160 76.9
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.0e-69 267.7 203 66.0
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 6.8e-69 265.0 227 59.0
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.7e-67 259.2 290 47.9
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.3e-67 258.1 154 77.9
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.1e-66 257.7 154 77.9
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.2e-62 244.2 177 67.2
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 7.3e-55 218.4 143 70.6
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 7.8e-49 198.4 134 71.6
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 2.3e-48 196.8 255 43.1
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.1e-47 194.5 135 71.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.2e-43 180.3 283 39.9
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.4e-42 177.6 133 66.9
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 4.7e-30 136.0 115 58.3
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 5.2e-29 132.5 118 57.6
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 2.6e-28 130.2 111 64.0
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 7.6e-28 128.6 71 80.3
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.1e-25 120.6 66 80.3
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 7.8e-25 118.6 118 55.1
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 6.2e-22 109.0 71 74.6
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 8.1e-22 108.6 80 68.8
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 3.8e-19 99.8 57 78.9
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 3.5e-17 93.2 68 64.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 9.0e-13 78.6 59 72.9
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.5e-12 77.8 58 58.6
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 4.5e-12 76.3 59 69.5
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 2.4e-10 70.5 67 53.7
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 2.8e-06 57.0 43 58.1


User provided reference genes

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