Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.7e-140 502.7 255 100.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.5e-99 365.9 244 75.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 6.7e-97 357.8 241 75.5
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.0e-96 356.3 244 73.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 2.6e-96 355.9 237 75.9
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.2e-95 352.8 241 74.7
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 2.2e-95 352.8 241 73.4
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 4.8e-95 351.7 241 72.6
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.1e-94 350.5 244 73.4
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.1e-94 349.0 244 72.5
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.2e-93 347.1 241 72.6
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.6e-93 345.9 244 72.5
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.5e-93 345.5 244 70.5
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 7.7e-93 344.4 239 72.0
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.2e-92 342.8 244 71.7
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 3.8e-92 342.0 244 72.5
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 5.0e-92 341.7 241 71.8
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.1e-91 340.5 241 71.0
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.5e-91 340.1 244 70.5
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.5e-91 340.1 243 70.8
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.5e-91 340.1 239 71.5
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.5e-91 339.3 251 70.5
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 2.5e-91 339.3 242 69.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.2e-91 339.0 241 70.5
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 5.5e-91 338.2 231 73.2
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 5.5e-91 338.2 237 71.3
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 7.2e-91 337.8 238 71.4
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 9.4e-91 337.4 238 72.7
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.2e-90 337.0 244 68.9
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.2e-90 337.0 244 70.1
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.2e-90 337.0 238 73.1
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.2e-90 337.0 264 67.0
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.6e-90 336.7 237 70.9
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.6e-90 336.7 240 70.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.7e-90 335.9 245 70.2
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 3.6e-90 335.5 244 70.5
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 4.7e-90 335.1 239 70.3
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 4.7e-90 335.1 243 67.9
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 6.1e-90 334.7 244 70.1
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 8.0e-90 334.3 244 69.3
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.4e-89 333.6 244 70.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.3e-89 332.8 243 70.8
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.3e-89 332.8 243 68.3
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.0e-89 332.4 238 71.0
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 4.0e-89 332.0 239 69.5
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.2e-88 330.5 241 68.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.5e-88 330.1 244 67.6
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.0e-88 329.7 238 69.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 2.0e-88 329.7 261 67.0
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.6e-88 329.3 237 68.8
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.6e-88 329.3 244 68.0
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 3.4e-88 328.9 243 66.7
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 7.5e-88 327.8 232 69.0
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 7.5e-88 327.8 233 71.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 7.5e-88 327.8 244 68.9
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 2.2e-87 326.2 231 69.3
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 3.7e-87 325.5 243 67.9
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 6.3e-87 324.7 244 67.6
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 6.3e-87 324.7 227 70.9
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 1.1e-86 323.9 233 69.5
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-86 323.9 233 69.5
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.1e-86 323.9 227 70.5
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-86 323.6 244 67.6
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.8e-86 323.2 233 69.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.4e-86 322.8 263 62.7
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.4e-86 322.8 243 67.1
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 3.1e-86 322.4 221 72.9
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 5.3e-86 321.6 223 72.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 5.3e-86 321.6 244 66.4
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 7.0e-86 321.2 236 68.6
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 9.1e-86 320.9 233 69.1
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 9.1e-86 320.9 233 69.1
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 9.1e-86 320.9 232 69.4
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.6e-85 320.1 261 64.0
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.6e-85 320.1 244 66.4
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.7e-85 319.3 247 68.4
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 3.5e-85 318.9 253 65.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 7.7e-85 317.8 269 61.3
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.9e-84 315.8 233 71.2
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.8e-84 315.5 235 66.8
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.8e-84 315.5 249 66.3
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.9e-83 313.2 240 68.3
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.4e-80 302.4 236 64.8
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.3e-79 300.4 212 72.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 8.3e-79 297.7 235 65.5
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.4e-78 297.0 229 66.8
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 2.4e-78 296.2 244 65.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-78 295.8 244 63.1
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.2e-77 293.9 222 66.2
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.3e-76 290.4 277 58.8
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.6e-74 283.5 223 66.4
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 4.0e-73 278.9 233 62.2
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.4e-72 275.8 278 55.8
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.8e-71 272.7 244 61.5
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 6.3e-71 271.6 196 69.4
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 8.3e-71 271.2 242 60.7
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.4e-70 270.4 185 73.5
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 7.0e-70 268.1 207 67.1
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 3.5e-69 265.8 195 69.7
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.1e-67 260.8 172 75.6
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.9e-67 260.0 197 66.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.8e-65 251.5 176 72.2
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.3e-63 247.3 245 54.3
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 4.9e-63 245.4 218 61.5
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 8.3e-63 244.6 233 56.7
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 5.4e-62 241.9 234 56.8
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 3.2e-54 216.1 228 46.5
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 4.6e-53 212.2 227 47.1
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.0e-52 211.1 223 52.5
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 6.6e-52 208.4 219 49.3
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 5.4e-46 188.7 167 55.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 2.1e-42 176.8 213 49.8
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-41 173.7 197 50.8
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 2.5e-35 153.3 180 50.0
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.4e-32 142.5 96 75.0
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.9e-28 129.4 91 69.2
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 6.9e-25 118.6 100 63.0
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-22 110.9 168 41.7
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 3.2e-22 109.8 100 62.0
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 8.7e-20 101.7 78 65.4
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 3.3e-19 99.8 100 57.0
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 4.3e-19 99.4 77 68.8
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-18 95.5 91 52.7
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-16 90.9 167 38.9
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-15 87.8 100 51.0
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.7e-15 87.4 96 47.9
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 3.8e-15 86.3 232 27.2
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 6.5e-15 85.5 86 58.1
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 5.5e-14 82.4 59 67.8
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 6.7e-12 75.5 50 70.0
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.5e-11 74.3 59 55.9
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 4.3e-11 72.8 103 42.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 7.4e-11 72.0 201 33.3
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 7.4e-11 72.0 201 33.3
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-08 64.3 55 60.0
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-08 64.3 55 60.0
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 3.4e-08 63.2 94 41.5
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 5.8e-08 62.4 49 61.2
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 7.6e-08 62.0 93 39.8
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.0e-07 61.6 74 41.9
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.3e-07 61.2 55 52.7
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.8e-07 59.7 37 78.4
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 5.0e-07 59.3 193 25.9
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 8.4e-07 58.5 228 23.2
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-06 57.0 48 62.5
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 3.2e-06 56.6 51 58.8
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 3.2e-06 56.6 216 22.2
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 5.5e-06 55.8 219 20.1
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 7.2e-06 55.5 225 21.8
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 9.3e-06 55.1 219 21.0


User provided reference genes

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