Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 3.0e-193 678.7 439 100.0
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 3.5e-109 399.4 429 74.8
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.3e-35 153.7 202 82.7
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 3.3e-35 153.7 207 78.7
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 9.7e-35 152.1 227 72.2
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 2.8e-34 150.6 209 80.4
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 8.2e-34 149.1 290 56.6
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.1e-33 148.7 197 82.2
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.4e-33 148.3 286 64.3
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.4e-33 148.3 212 75.9
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 1.8e-33 147.9 203 75.4
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 3.1e-33 147.1 227 71.8
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 3.1e-33 147.1 187 78.1
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 5.3e-33 146.4 227 74.4
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 6.9e-33 146.0 324 58.6
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 9.0e-33 145.6 257 69.3
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 9.0e-33 145.6 209 78.5
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 1.2e-32 145.2 199 82.4
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 2.0e-32 144.4 216 77.8
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 2.6e-32 144.1 189 79.9
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 2.6e-32 144.1 188 82.4
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 5.9e-32 142.9 210 78.6
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 7.7e-32 142.5 239 70.3
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 1.0e-31 142.1 190 80.5
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.0e-31 142.1 284 63.0
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.3e-31 141.7 191 82.7
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.3e-31 141.7 187 84.0
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 5.0e-31 139.8 206 77.7
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 6.5e-31 139.4 198 63.1
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 6.5e-31 139.4 353 55.8
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 2.5e-30 137.5 398 51.5
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 2.5e-30 137.5 316 57.6
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 3.2e-30 137.1 186 78.0
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 3.2e-30 137.1 186 83.3
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 7.2e-30 136.0 189 82.0
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 7.2e-30 136.0 186 82.3
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 7.2e-30 136.0 225 68.9
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.2e-29 135.2 207 76.8
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 1.6e-29 134.8 316 57.0
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.7e-29 134.0 208 76.4
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 3.6e-29 133.7 309 57.0
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 3.6e-29 133.7 314 58.3
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.6e-29 133.3 290 61.4
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 4.6e-29 133.3 319 57.7
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 7.9e-29 132.5 211 71.6
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 7.9e-29 132.5 287 61.3
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 7.9e-29 132.5 240 70.4
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 1.0e-28 132.1 285 61.4
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.0e-28 132.1 300 59.3
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.8e-28 131.3 310 55.8
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 2.3e-28 131.0 283 61.1
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 3.0e-28 130.6 214 73.4
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 3.0e-28 130.6 189 81.0
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 3.9e-28 130.2 294 58.8
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 3.9e-28 130.2 189 82.0
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 5.1e-28 129.8 325 57.2
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 6.7e-28 129.4 322 56.2
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 8.8e-28 129.0 322 56.2
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 8.8e-28 129.0 293 61.1
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 8.8e-28 129.0 286 60.1
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 8.8e-28 129.0 335 57.6
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 1.1e-27 128.6 296 60.5
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 1.1e-27 128.6 288 62.2
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 1.5e-27 128.3 189 81.5
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 1.5e-27 128.3 329 55.0
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 1.5e-27 128.3 218 72.9
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.5e-27 128.3 202 77.7
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.5e-27 128.3 290 60.3
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 2.0e-27 127.9 326 57.1
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 2.0e-27 127.9 187 80.2
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 2.0e-27 127.9 225 71.1
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 2.5e-27 127.5 300 62.0
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 3.3e-27 127.1 278 63.7
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 3.3e-27 127.1 293 59.0
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 4.3e-27 126.7 300 59.3
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 7.4e-27 125.9 187 80.2
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 9.7e-27 125.6 207 74.9
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.3e-26 125.2 296 55.4
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 1.7e-26 124.8 187 80.2
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 1.7e-26 124.8 305 56.4
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 2.2e-26 124.4 259 61.0
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 4.8e-26 123.2 207 74.9
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 1.4e-25 121.7 327 51.4
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 1.4e-25 121.7 207 73.9
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.8e-25 121.3 285 44.6
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 3.1e-25 120.6 337 51.6
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 5.3e-25 119.8 227 68.3
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 6.9e-25 119.4 343 44.3
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.5e-24 118.2 306 57.5
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 3.4e-24 117.1 186 57.0
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 5.9e-24 116.3 260 63.8
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 5.9e-24 116.3 278 60.8
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 1.3e-23 115.2 321 57.3
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 2.2e-23 114.4 307 57.0
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.9e-23 114.0 258 62.4
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 2.9e-23 114.0 280 59.3
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 6.5e-23 112.8 230 66.5
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.5e-23 112.8 78 75.6
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 3.2e-22 110.5 58 93.1
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.5e-22 109.8 78 76.9
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.6e-21 108.2 56 92.9
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 2.1e-21 107.8 66 80.3
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.1e-21 107.8 56 91.1
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 3.7e-18 97.1 58 77.6
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.1e-17 95.5 187 73.3
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.8e-17 94.7 172 54.1
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 7.0e-17 92.8 191 70.7
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 9.1e-17 92.4 81 64.2
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.0e-16 91.3 195 69.7
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.0e-15 89.0 187 72.2
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 5.0e-15 86.7 383 45.4
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 6.5e-15 86.3 211 31.8
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 1.1e-14 85.5 187 71.7
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.5e-11 75.1 36 100.0
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.6e-11 74.3 343 49.3
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 3.3e-11 73.9 59 55.9
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 7.5e-11 72.8 59 55.9
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 1.3e-10 72.0 59 55.9
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 5.3e-09 66.6 60 55.0
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 5.3e-09 66.6 60 55.0
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 2.0e-08 64.7 72 48.6
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.0e-07 62.4 72 43.1
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-07 62.0 72 44.4
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.3e-07 62.0 146 71.2
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 1.3e-07 62.0 43 72.1
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.3e-07 62.0 80 40.0
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 2.2e-07 61.2 35 85.7
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 8.5e-07 59.3 106 35.8
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.5e-07 59.3 106 35.8
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 8.5e-07 59.3 72 41.7
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.1e-06 58.9 131 35.1
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-06 58.9 72 43.1
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.9e-06 58.2 72 41.7
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.5e-06 57.8 48 52.1
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.5e-06 57.8 72 41.7
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 5.5e-06 56.6 59 44.1
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 9.4e-06 55.8 73 42.5
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 9.4e-06 55.8 72 41.7
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 9.4e-06 55.8 73 39.7


User provided reference genes

Program Settings