Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.9e-157 558.1 292 100.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 8.3e-91 337.8 255 68.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 9.5e-87 324.3 320 57.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.3e-85 319.7 314 59.2
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 3.0e-85 319.3 295 60.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.4e-84 315.5 306 57.8
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.7e-84 315.1 253 66.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 7.5e-84 314.7 310 58.4
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 3.7e-83 312.4 264 63.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 9.2e-82 307.8 318 56.6
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 3.5e-81 305.8 323 56.0
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 7.7e-81 304.7 294 59.2
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 7.7e-81 304.7 313 56.9
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 7.7e-81 304.7 313 56.9
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.0e-80 304.3 273 60.4
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.3e-80 303.9 311 55.0
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.3e-80 303.9 253 63.2
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 5.0e-80 302.0 309 56.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 6.6e-80 301.6 274 59.5
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 8.6e-80 301.2 316 55.7
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.1e-79 300.8 292 56.8
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.5e-79 300.4 259 61.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.9e-79 300.1 274 59.1
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.5e-79 299.7 259 62.5
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.3e-79 299.3 286 57.7
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 3.3e-79 299.3 294 58.5
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 4.3e-79 298.9 294 57.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 5.6e-79 298.5 312 56.1
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 5.6e-79 298.5 255 63.5
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 9.5e-79 297.7 300 55.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.6e-78 297.0 259 60.6
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.8e-78 296.2 303 57.1
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.8e-78 296.2 307 55.0
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.8e-78 296.2 293 57.3
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.7e-78 295.4 300 57.3
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 6.1e-78 295.0 300 57.3
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 6.1e-78 295.0 310 53.9
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.1e-78 295.0 259 61.4
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 6.1e-78 295.0 306 53.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.0e-77 294.3 306 55.2
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.0e-77 294.3 268 60.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.4e-77 293.9 255 62.7
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.3e-77 293.1 259 61.4
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.3e-77 293.1 259 60.6
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.3e-77 293.1 287 56.8
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.0e-77 292.7 247 61.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 3.0e-77 292.7 315 53.0
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 4.0e-77 292.4 296 57.1
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.0e-77 292.4 294 58.8
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.0e-77 292.4 265 60.0
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 8.9e-77 291.2 301 54.8
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 8.9e-77 291.2 262 59.5
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.2e-76 290.8 311 54.0
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-76 290.8 255 60.4
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.5e-76 290.4 259 59.5
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.0e-76 290.0 300 56.0
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 3.4e-76 289.3 255 63.5
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 5.7e-76 288.5 255 59.6
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 7.5e-76 288.1 304 53.3
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 7.5e-76 288.1 296 55.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 9.8e-76 287.7 265 61.5
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 9.8e-76 287.7 293 54.9
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.3e-75 287.3 261 59.0
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.7e-75 287.0 283 56.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.9e-75 285.4 304 53.3
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.9e-75 285.4 255 58.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 6.4e-75 285.0 256 59.4
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 6.4e-75 285.0 293 55.3
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 8.3e-75 284.6 256 59.4
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 8.3e-75 284.6 313 55.0
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.4e-74 283.9 259 59.1
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.4e-74 283.9 301 53.8
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-74 283.9 253 59.7
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.8e-74 283.5 278 58.6
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 3.2e-74 282.7 255 60.4
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.2e-74 282.7 255 58.8
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 5.4e-74 282.0 248 59.7
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 5.4e-74 282.0 248 59.7
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 5.4e-74 282.0 248 60.1
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.0e-74 281.6 298 54.0
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 9.2e-74 281.2 267 57.3
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-73 280.4 248 59.7
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 2.0e-73 280.0 302 53.0
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 2.0e-73 280.0 248 59.3
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.0e-73 280.0 302 53.0
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 2.0e-73 280.0 302 53.0
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 3.5e-73 279.3 286 53.1
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.9e-73 278.5 290 54.1
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.0e-72 277.7 304 53.0
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.0e-72 277.7 304 53.0
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.3e-72 277.3 242 61.6
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.3e-72 277.3 310 51.9
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-72 276.9 292 54.5
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.7e-72 276.9 290 53.8
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-71 274.2 311 52.7
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.5e-71 273.9 286 55.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 2.5e-71 273.1 260 57.7
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.3e-71 272.7 301 51.8
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 7.3e-71 271.6 295 52.2
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 7.3e-71 271.6 295 52.2
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 9.5e-71 271.2 302 53.6
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 9.5e-71 271.2 295 52.5
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.7e-70 268.9 237 60.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 4.7e-70 268.9 237 60.3
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.0e-69 267.7 367 45.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 6.8e-69 265.0 237 59.9
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 8.9e-69 264.6 266 56.4
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 3.4e-68 262.7 221 59.3
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.4e-68 262.3 273 53.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 9.8e-68 261.2 273 53.5
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 9.8e-68 261.2 314 48.7
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.2e-67 260.0 230 57.8
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.7e-67 259.2 306 49.0
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 3.7e-67 259.2 303 50.5
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-66 257.7 283 52.3
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-66 257.7 367 45.2
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 9.2e-66 254.6 296 50.3
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.0e-65 253.4 314 49.0
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.0e-64 248.8 274 54.0
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.9e-63 246.9 314 50.3
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 7.3e-63 245.0 253 53.4
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.5e-63 244.6 218 58.7
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.6e-62 243.8 249 52.6
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.3e-61 240.0 268 52.6
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 3.4e-60 236.1 220 58.6
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.2e-58 229.6 343 44.9
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.0e-57 225.3 337 44.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.0e-56 224.6 266 46.2
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.3e-56 224.2 231 53.2
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 5.1e-56 222.2 175 60.0
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.6e-56 221.9 278 46.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 5.6e-55 218.8 247 49.4
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.0e-53 212.6 297 43.1
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.4e-52 209.1 271 49.8
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.6e-49 200.7 209 54.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 7.8e-49 198.4 242 45.9
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-48 197.2 221 49.8
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.5e-47 193.4 226 43.8
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.0e-44 183.7 221 54.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.4e-44 183.0 444 33.6
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 6.4e-43 178.7 245 43.3
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 4.2e-42 176.0 144 62.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.1e-41 173.7 261 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.0e-40 171.4 184 48.4
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 7.6e-36 155.2 191 49.7
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 7.1e-34 148.7 127 58.3
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.3e-32 143.7 136 56.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.8e-22 110.2 107 47.7
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.5e-20 104.4 130 47.7
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.0e-16 90.1 79 51.9
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.3e-14 84.7 71 60.6
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.0e-12 77.4 72 54.2
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.4e-10 71.2 74 39.2
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.1e-09 67.4 50 70.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 3.3e-07 60.1 49 55.1
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 3.3e-07 60.1 74 52.7


User provided reference genes

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