Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4423 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 3.6e-73 278.1 137 100.0
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 1.8e-51 206.1 111 91.0
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 8.2e-33 144.1 129 58.1
Cc07_g01340 Coffea canephora HOM05D004735 ORTHO05D005243 2.4e-32 142.5 137 51.8
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 5.3e-32 141.4 123 60.2
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 5.9e-31 137.9 131 54.2
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 1.4e-29 133.3 134 50.7
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 5.5e-29 131.3 131 49.6
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 5.5e-29 131.3 130 53.1
CSS0050200 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 7.2e-29 131.0 115 53.0
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 1.2e-28 130.2 131 50.4
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.6e-28 129.8 131 48.9
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 1.6e-28 129.8 118 52.5
SEGI_21903 Sequoiadendron giganteum HOM05D004735 ORTHO05D005243 2.1e-28 129.4 116 52.6
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 2.1e-28 129.4 123 52.8
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 2.1e-28 129.4 106 58.5
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 2.7e-28 129.0 125 50.4
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 3.6e-28 128.6 135 47.4
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 8.0e-28 127.5 111 51.4
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 8.0e-28 127.5 112 54.5
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 8.0e-28 127.5 112 52.7
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 1.0e-27 127.1 132 45.5
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 1.4e-27 126.7 113 52.2
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.4e-27 126.7 137 47.4
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 1.4e-27 126.7 137 47.4
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 1.8e-27 126.3 128 50.8
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.8e-27 126.3 132 49.2
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 1.8e-27 126.3 131 50.4
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 2.3e-27 125.9 110 55.5
CSS0035487 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.3e-27 125.9 122 50.8
Gohir.A11G063866 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.3e-27 125.9 130 48.5
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 3.0e-27 125.6 110 54.5
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 3.0e-27 125.6 112 55.4
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.0e-27 125.6 137 46.7
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 5.2e-27 124.8 111 52.3
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 5.2e-27 124.8 109 54.1
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 5.2e-27 124.8 130 50.8
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 5.2e-27 124.8 131 48.9
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 5.2e-27 124.8 114 50.9
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 6.7e-27 124.4 127 49.6
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 6.7e-27 124.4 132 48.5
Lj7A617T73 Lonicera japonica HOM05D004735 ORTHO05D005243 6.7e-27 124.4 133 47.4
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 6.7e-27 124.4 110 54.5
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 8.8e-27 124.0 114 50.0
Lalb_Chr22g0359841 Lupinus albus HOM05D004735 ORTHO05D005243 1.1e-26 123.6 133 48.9
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 2.0e-26 122.9 107 51.4
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 2.0e-26 122.9 110 53.6
Peaxi162Scf00420g00843 Petunia axillaris HOM05D004735 ORTHO05D005243 2.0e-26 122.9 113 51.3
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 2.0e-26 122.9 131 49.6
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 2.6e-26 122.5 97 62.9
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 3.3e-26 122.1 107 56.1
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 4.4e-26 121.7 115 52.2
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 4.4e-26 121.7 115 52.2
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 5.7e-26 121.3 110 53.6
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 7.4e-26 120.9 112 53.6
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 7.4e-26 120.9 110 54.5
Solyc02g094530.1 Solanum lycopersicum HOM05D004735 ORTHO05D005243 7.4e-26 120.9 106 53.8
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 9.7e-26 120.6 107 56.1
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 9.7e-26 120.6 107 56.1
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 9.7e-26 120.6 122 49.2
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 9.7e-26 120.6 107 51.4
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 1.3e-25 120.2 107 51.4
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 1.7e-25 119.8 124 49.2
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.7e-25 119.8 115 52.2
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.2e-25 119.4 115 52.2
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 2.2e-25 119.4 117 52.1
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 2.8e-25 119.0 111 53.2
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 3.7e-25 118.6 110 52.7
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 3.7e-25 118.6 131 44.3
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 3.7e-25 118.6 127 49.6
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 4.8e-25 118.2 112 51.8
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 4.8e-25 118.2 110 50.9
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 4.8e-25 118.2 106 52.8
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 6.3e-25 117.9 107 53.3
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 6.3e-25 117.9 131 45.8
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 8.2e-25 117.5 107 50.5
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 8.2e-25 117.5 107 55.1
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 8.2e-25 117.5 133 45.9
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 8.2e-25 117.5 127 46.5
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 1.4e-24 116.7 114 51.8
CSS0009135 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.4e-24 116.7 122 48.4
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.4e-24 116.7 130 46.9
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 1.4e-24 116.7 112 51.8
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 1.4e-24 116.7 112 48.2
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 1.8e-24 116.3 107 53.3
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.8e-24 116.3 109 51.4
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 2.4e-24 115.9 129 46.5
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 2.4e-24 115.9 109 50.5
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 3.1e-24 115.5 131 43.5
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 3.1e-24 115.5 107 53.3
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 3.1e-24 115.5 132 47.7
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 4.1e-24 115.2 101 53.5
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 4.1e-24 115.2 110 50.0
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 5.3e-24 114.8 132 45.5
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 5.3e-24 114.8 128 49.2
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 7.0e-24 114.4 107 52.3
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 9.1e-24 114.0 128 44.5
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 2.0e-23 112.8 133 46.6
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 2.6e-23 112.5 132 46.2
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 2.6e-23 112.5 112 48.2
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 3.5e-23 112.1 127 47.2
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 3.5e-23 112.1 133 45.9
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 1.0e-22 110.5 114 49.1
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 1.3e-22 110.2 134 44.0
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 1.7e-22 109.8 107 48.6
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 1.7e-22 109.8 107 51.4
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 2.2e-22 109.4 107 47.7
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 2.9e-22 109.0 132 45.5
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 3.8e-22 108.6 132 45.5
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 6.5e-22 107.8 130 44.6
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.9e-21 106.3 131 44.3
SHI13678 Sapria himalayana HOM05D004735 ORTHO05D005243 1.9e-21 106.3 126 44.4
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 2.5e-21 105.9 107 46.7
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 4.2e-21 105.1 133 42.9
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 7.2e-21 104.4 107 49.5
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 2.1e-20 102.8 115 45.2
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.6e-20 102.1 84 58.3
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 6.1e-20 101.3 115 43.5
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.2e-18 97.1 87 52.9
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 8.3e-17 90.9 68 58.8
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 5.3e-16 88.2 88 50.0
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 1.2e-15 87.0 106 44.3
CBR_g32498 Chara braunii HOM05D004735 ORTHO05D005243 1.3e-14 83.6 75 49.3
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 5.5e-13 78.2 97 41.2
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 9.4e-13 77.4 127 37.0
SMO112G0099 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 2.1e-12 76.3 103 38.8
SMO364G0040 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 8.0e-12 74.3 103 36.9
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 1.2e-10 70.5 84 45.2
A02p02280 Brassica napus HOM05D004735 ORTHO05D005243 1.3e-09 67.0 51 60.8
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 2.7e-07 59.3 81 40.7
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 4.5e-07 58.5 65 50.8
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 4.5e-07 58.5 79 38.0
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 7.7e-07 57.8 79 38.0
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 7.7e-07 57.8 79 38.0
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 7.7e-07 57.8 65 41.5
Thhalv10009871m.g Eutrema salsugineum HOM05D002855 ORTHO05D010889 1.0e-06 57.4 65 47.7
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 1.0e-06 57.4 81 39.5
Carub.0001s0132 Capsella rubella HOM05D002855 ORTHO05D010889 1.3e-06 57.0 65 47.7
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 1.3e-06 57.0 81 38.3
vmacro14495 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.3e-06 57.0 81 39.5
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 1.7e-06 56.6 65 44.6
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.7e-06 56.6 65 44.6
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.7e-06 56.6 65 47.7
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 1.7e-06 56.6 81 40.7
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 2.3e-06 56.2 81 35.8
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.3e-06 56.2 79 38.0
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 2.3e-06 56.2 126 31.0
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 2.3e-06 56.2 79 39.2
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 2.3e-06 56.2 65 47.7
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 2.3e-06 56.2 65 47.7
unitig_736.g22426 Utricularia gibba HOM05D002855 ORTHO05D004406 2.3e-06 56.2 78 37.2
CARHR001590 Cardamine hirsuta HOM05D002855 ORTHO05D010889 2.9e-06 55.8 65 47.7
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 3.8e-06 55.5 80 41.2
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.8e-06 55.5 64 48.4
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.8e-06 55.5 79 36.7
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.8e-06 55.5 79 36.7
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 3.8e-06 55.5 65 47.7
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 3.8e-06 55.5 65 47.7
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 3.8e-06 55.5 65 44.6
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 5.0e-06 55.1 79 38.0
AT1G02290 Arabidopsis thaliana HOM05D002855 ORTHO05D010889 6.6e-06 54.7 65 46.2
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 6.6e-06 54.7 122 29.5
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 6.6e-06 54.7 65 43.1
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.6e-06 54.7 81 35.8
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.6e-06 54.7 81 35.8
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 6.6e-06 54.7 81 35.8
AL1G11620 Arabidopsis lyrata HOM05D002855 ORTHO05D010889 8.6e-06 54.3 65 44.6
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 8.6e-06 54.3 81 38.3
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 8.6e-06 54.3 122 29.5
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 8.6e-06 54.3 65 43.1


User provided reference genes

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