Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 3.0e-142 508.4 251 100.0
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.2e-77 293.9 230 65.2
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 4.5e-77 292.0 247 61.1
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.5e-75 286.2 235 60.9
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.1e-74 283.1 251 56.6
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.1e-74 283.1 240 60.0
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.7e-74 282.7 249 58.6
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.5e-74 282.3 249 58.2
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 3.5e-74 282.3 243 59.7
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 3.5e-74 282.3 256 58.2
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.6e-74 282.0 249 58.2
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.3e-73 280.4 225 63.1
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 1.3e-73 280.4 222 61.3
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.8e-73 280.0 255 53.3
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.3e-73 279.6 249 57.0
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 2.3e-73 279.6 251 53.8
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 3.0e-73 279.3 211 64.5
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 6.7e-73 278.1 213 63.8
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.1e-72 277.3 198 65.7
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.1e-72 277.3 189 67.2
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 1.1e-72 277.3 245 57.6
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.5e-72 276.9 227 60.8
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 1.5e-72 276.9 238 58.4
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.9e-72 276.6 198 66.7
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 2.5e-72 276.2 245 56.7
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.5e-72 276.2 201 64.7
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 3.3e-72 275.8 247 57.1
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.3e-72 275.4 259 56.4
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.3e-72 275.4 196 64.8
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 5.7e-72 275.0 200 64.0
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 5.7e-72 275.0 247 56.7
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 7.4e-72 274.6 254 56.7
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 9.6e-72 274.2 256 55.1
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.3e-71 273.9 198 65.2
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.3e-71 273.9 240 59.2
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.3e-71 273.9 186 69.4
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 1.6e-71 273.5 243 58.0
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.1e-71 273.1 189 66.7
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 2.1e-71 273.1 249 54.6
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 2.8e-71 272.7 200 66.5
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.8e-71 272.7 216 61.1
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 3.7e-71 272.3 204 63.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 6.2e-71 271.6 237 57.0
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 8.2e-71 271.2 205 62.9
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.1e-70 270.8 198 66.2
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.1e-70 270.8 196 64.3
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.8e-70 270.0 196 65.3
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.4e-70 269.6 198 63.6
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.4e-70 269.6 196 64.8
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 3.1e-70 269.2 223 59.6
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 3.1e-70 269.2 247 56.7
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.1e-70 268.9 187 66.3
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 4.1e-70 268.9 259 54.4
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.1e-70 268.9 259 54.4
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 5.3e-70 268.5 264 54.2
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 6.9e-70 268.1 198 64.1
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 9.0e-70 267.7 234 58.1
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 9.0e-70 267.7 236 58.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.2e-69 267.3 204 64.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.5e-69 266.9 207 61.4
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 2.0e-69 266.5 249 54.6
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 2.0e-69 266.5 239 57.7
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.0e-69 266.5 193 66.3
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 2.0e-69 266.5 224 58.5
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 2.0e-69 266.5 196 62.2
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.6e-69 266.2 246 55.7
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.6e-69 266.2 204 62.7
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 4.5e-69 265.4 196 62.8
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 5.8e-69 265.0 232 57.3
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.8e-69 265.0 236 56.8
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 5.8e-69 265.0 192 65.6
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.0e-68 264.2 204 60.8
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.3e-68 263.8 204 61.8
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.7e-68 263.5 184 66.8
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.7e-68 263.5 198 62.6
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.9e-68 262.7 204 61.8
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 2.9e-68 262.7 198 62.6
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.0e-68 261.9 238 54.6
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.1e-67 260.8 246 54.9
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.4e-67 260.4 227 56.4
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.4e-67 260.4 224 58.5
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.5e-67 259.6 228 55.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 3.2e-67 259.2 246 54.5
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 4.2e-67 258.8 247 54.3
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 4.2e-67 258.8 247 54.3
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 4.2e-67 258.8 243 55.6
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 4.2e-67 258.8 233 58.4
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 7.2e-67 258.1 243 55.6
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.1e-66 256.5 210 58.1
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.0e-65 254.2 188 63.8
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.3e-65 253.8 226 56.2
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.0e-65 252.7 239 55.2
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 6.7e-65 251.5 198 60.6
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 8.7e-65 251.1 253 53.0
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.7e-65 251.1 158 73.4
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.5e-64 250.4 195 62.6
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.9e-64 250.0 189 60.3
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 2.5e-64 249.6 248 52.8
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 3.7e-63 245.7 190 61.1
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 1.1e-62 244.2 234 53.8
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.4e-62 243.8 238 52.9
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.4e-62 243.0 182 62.6
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 5.3e-62 241.9 190 59.5
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 9.0e-62 241.1 155 70.3
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.7e-61 238.0 240 53.3
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.0e-60 237.7 165 64.2
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.9e-60 236.1 158 69.6
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.0e-60 235.3 189 59.3
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 2.5e-59 233.0 253 50.2
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 4.2e-59 232.3 233 51.9
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 9.4e-59 231.1 259 51.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-58 230.3 259 49.0
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 3.0e-57 226.1 255 51.0
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.1e-56 224.2 196 59.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.5e-56 223.0 243 48.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.0e-53 213.4 161 64.0
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 2.6e-53 213.0 261 47.5
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.0e-52 211.1 258 47.7
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 4.2e-51 205.7 220 45.5
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 4.4e-48 195.7 204 52.5
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 1.4e-46 190.7 143 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 5.0e-44 182.2 242 41.3
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.6e-42 177.2 162 53.1
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 9.7e-40 167.9 128 60.9
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.5e-35 152.1 151 53.0
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 5.2e-33 145.6 103 65.0
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.6e-32 143.3 101 64.4
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.5e-32 141.7 101 63.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.1e-30 134.8 107 60.7
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 2.0e-29 133.7 102 59.8
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.7e-28 130.6 92 63.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.1e-22 111.3 210 34.3
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 3.1e-22 109.8 199 36.2
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 4.1e-22 109.4 203 35.5
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 2.0e-21 107.1 225 32.9
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 2.0e-21 107.1 189 33.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.5e-21 106.3 101 51.5
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.0e-20 104.8 169 37.3
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 8.6e-20 101.7 226 33.2
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.6e-19 99.0 194 33.5
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 3.0e-17 93.2 165 35.2
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 4.0e-17 92.8 132 42.4
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 4.1e-14 82.8 216 29.6
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.4e-14 82.4 49 77.6
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 2.0e-13 80.5 52 78.8
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 5.9e-13 79.0 119 37.0
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 2.3e-12 77.0 131 35.1
Cre06.g278096 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 9.5e-11 71.6 130 33.8
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 3.6e-10 69.7 154 33.8
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 8.0e-10 68.6 60 51.7
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 2.3e-09 67.0 110 34.5
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 5.2e-09 65.9 124 31.5
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 1.5e-08 64.3 39 76.9
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 4.4e-08 62.8 79 39.2
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.7e-07 60.8 65 50.8


User provided reference genes

Program Settings