Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 5.6e-99 364.4 198 100.0
CDE05G2293 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 1.7e-42 176.8 128 78.9
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 9.4e-38 161.0 192 49.0
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 2.6e-32 142.9 179 45.8
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 1.5e-27 127.1 178 42.7
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 8.2e-26 121.3 145 45.5
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 3.1e-25 119.4 154 44.8
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 7.7e-24 114.8 152 44.7
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 2.9e-23 112.8 150 44.7
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 2.9e-23 112.8 152 41.4
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 3.8e-23 112.5 171 41.5
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 3.8e-23 112.5 149 43.6
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 8.5e-23 111.3 172 39.5
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 8.5e-23 111.3 160 39.4
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 2.5e-22 109.8 161 39.8
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 2.5e-22 109.8 153 40.5
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 4.2e-22 109.0 168 40.5
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 4.2e-22 109.0 168 40.5
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 9.4e-22 107.8 152 38.8
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 2.7e-21 106.3 194 35.1
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 2.7e-21 106.3 145 43.4
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 2.7e-21 106.3 151 39.1
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 8.0e-21 104.8 171 39.2
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 1.4e-20 104.0 174 38.5
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 1.4e-20 104.0 145 40.7
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 1.4e-20 104.0 145 40.7
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 3.0e-20 102.8 178 35.4
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 3.0e-20 102.8 166 39.8
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 1.2e-19 100.9 171 35.1
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 1.5e-19 100.5 178 34.8
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 1.5e-19 100.5 145 39.3
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 4.4e-19 99.0 161 37.9
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 5.7e-19 98.6 171 37.4
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 9.8e-19 97.8 146 40.4
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 1.3e-18 97.4 145 38.6
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 1.3e-18 97.4 139 40.3
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 1.3e-18 97.4 155 36.8
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 1.7e-18 97.1 172 36.6
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 1.7e-18 97.1 187 35.8
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 2.8e-18 96.3 172 36.0
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 2.8e-18 96.3 145 37.2
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 2.8e-18 96.3 160 39.4
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 4.8e-18 95.5 189 36.0
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 6.3e-18 95.1 161 36.6
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 8.3e-18 94.7 145 37.2
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.8e-17 93.6 155 36.8
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.8e-17 93.6 166 33.7
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.8e-17 93.6 166 33.7
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 2.4e-17 93.2 155 35.5
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 3.1e-17 92.8 182 33.0
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 4.1e-17 92.4 172 37.2
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 7.0e-17 91.7 145 37.9
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 1.6e-16 90.5 164 36.0
Os09g0421200 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002608 2.0e-16 90.1 151 39.1
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 2.7e-16 89.7 178 34.3
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 1.3e-15 87.4 140 37.1
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.3e-15 87.4 165 35.2
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 1.7e-15 87.0 161 37.3
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 3.8e-15 85.9 171 32.7
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 3.8e-15 85.9 166 35.5
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 5.0e-15 85.5 149 35.6
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 5.0e-15 85.5 145 37.9
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 8.5e-15 84.7 144 33.3
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 1.5e-14 84.0 145 35.9
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 1.9e-14 83.6 191 30.4
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 2.5e-14 83.2 155 34.8
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 3.2e-14 82.8 175 32.0
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 7.2e-14 81.6 153 32.7
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 2.1e-13 80.1 179 31.3
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 4.7e-13 79.0 190 31.6
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 6.1e-13 78.6 167 33.5
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 1.4e-12 77.4 191 32.5
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 1.4e-12 77.4 171 31.6
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 1.4e-12 77.4 171 31.6
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 1.4e-12 77.4 146 32.9
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 5.2e-12 75.5 175 30.9
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 8.8e-12 74.7 193 29.5
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 8.8e-12 74.7 171 31.0
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 2.0e-11 73.6 180 28.9
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 3.4e-11 72.8 175 30.3
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 1.7e-10 70.5 99 37.4
HPP92_026952 Vanilla planifolia HOM05D003358 ORTHO05D003864 2.2e-10 70.1 148 33.8
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 8.3e-10 68.2 145 31.0
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 3.1e-09 66.2 175 30.3
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 4.1e-09 65.9 74 48.6
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 5.4e-09 65.5 103 36.9
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 7.0e-09 65.1 145 33.8
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 9.2e-09 64.7 189 29.1
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 3.8e-07 59.3 75 42.7
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 6.6e-07 58.5 171 28.7
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 8.6e-07 58.2 200 27.0
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 1.1e-06 57.8 83 38.6
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 1.1e-06 57.8 66 45.5
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 1.5e-06 57.4 88 39.8
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 1.5e-06 57.4 88 39.8
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 1.5e-06 57.4 140 30.7
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 4.3e-06 55.8 66 43.9


User provided reference genes

Program Settings