Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.9e-264 915.2 438 100.0
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.1e-192 676.8 463 68.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.5e-192 675.6 464 70.3
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 2.8e-191 672.2 456 70.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.7e-191 671.4 464 67.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.7e-191 671.4 464 67.5
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 8.1e-191 670.6 462 69.5
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 8.1e-191 670.6 455 69.2
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.3e-190 669.1 461 68.1
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.5e-189 666.4 463 68.5
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 7.5e-189 664.1 461 68.1
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 9.9e-189 663.7 461 67.7
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 9.9e-189 663.7 461 67.7
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.9e-188 662.1 464 66.8
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 3.7e-188 661.8 461 69.0
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 6.4e-188 661.0 462 67.5
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 7.1e-187 657.5 449 69.0
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 7.1e-187 657.5 457 67.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.6e-186 656.4 468 67.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.7e-186 655.6 451 68.1
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 7.8e-186 654.1 461 68.5
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.0e-185 653.7 475 65.9
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.3e-185 653.3 451 68.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 3.9e-185 651.7 464 66.6
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 5.1e-185 651.4 461 66.8
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 6.6e-185 651.0 465 67.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 4.3e-184 648.3 457 66.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 9.5e-184 647.1 465 66.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.2e-183 646.7 461 66.4
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.8e-183 645.6 464 67.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 6.2e-183 644.4 464 65.7
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.1e-182 642.1 462 65.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 6.8e-182 641.0 459 66.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.9e-182 640.6 441 67.3
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 8.9e-182 640.6 452 66.8
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.2e-181 640.2 465 65.2
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 4.4e-181 638.3 461 65.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 4.2e-179 631.7 446 66.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 5.4e-179 631.3 462 64.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.9e-176 622.9 451 65.4
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 7.3e-176 620.9 445 66.5
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 6.2e-175 617.8 441 65.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 6.2e-175 617.8 445 66.1
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.4e-174 616.7 462 64.1
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.8e-174 616.3 459 65.4
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 5.3e-174 614.8 472 63.3
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 9.0e-174 614.0 456 64.0
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.2e-173 613.6 443 64.6
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.6e-173 612.5 463 62.6
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.4e-173 612.1 455 64.8
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.8e-173 611.3 463 62.6
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-172 609.8 463 62.4
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.7e-172 609.8 464 63.6
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.7e-172 609.8 452 64.8
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.2e-172 609.4 445 64.5
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 6.4e-172 607.8 452 64.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.4e-172 607.4 455 64.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 8.4e-172 607.4 451 63.6
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.4e-171 606.7 445 64.0
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 3.2e-171 605.5 443 65.7
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.4e-171 604.7 458 64.2
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.3e-171 604.0 456 64.3
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.2e-170 603.6 445 64.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.1e-170 602.8 451 63.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.7e-170 602.4 457 64.6
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 6.0e-170 601.3 465 61.9
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 3.0e-169 599.0 449 64.4
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.1e-169 598.2 471 61.4
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.7e-169 597.4 453 63.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 3.3e-168 595.5 478 60.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.1e-166 589.0 449 62.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 9.0e-166 587.4 438 65.3
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.0e-165 586.3 422 65.4
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 4.9e-164 581.6 461 62.0
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.4e-164 580.9 468 60.5
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.9e-163 579.7 459 61.2
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 4.2e-163 578.6 382 70.2
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 9.3e-163 577.4 451 61.6
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 9.3e-163 577.4 502 57.6
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.6e-162 576.6 465 59.8
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 7.9e-162 574.3 461 59.2
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.9e-161 572.0 462 59.7
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.9e-161 572.0 463 59.8
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 7.4e-160 567.8 448 62.9
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.3e-159 567.0 464 59.3
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.3e-159 567.0 462 59.7
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.1e-159 566.2 462 58.9
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.1e-159 566.2 464 59.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-158 563.9 462 58.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.4e-158 563.5 462 59.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 9.0e-158 560.8 464 58.4
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 9.0e-158 560.8 464 58.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.9e-156 555.8 450 59.8
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.9e-156 555.8 492 56.7
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.8e-156 555.4 474 58.4
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.4e-155 553.5 464 58.4
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.6e-154 550.1 341 74.2
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 6.0e-154 548.1 447 62.2
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.3e-153 547.0 456 58.1
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.5e-152 542.7 395 65.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 7.4e-152 541.2 449 58.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 8.2e-151 537.7 474 55.9
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 4.5e-149 531.9 372 68.0
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.2e-146 523.9 526 52.1
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.9e-144 516.5 392 63.8
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 6.9e-142 508.1 399 63.2
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 6.9e-142 508.1 463 55.9
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.0e-140 504.2 416 58.4
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.7e-140 503.4 422 58.3
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.4e-139 500.4 477 53.7
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 9.4e-139 497.7 450 53.6
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.1e-138 496.5 435 59.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 9.1e-134 481.1 468 49.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.0e-133 479.9 464 51.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 5.9e-133 478.4 450 51.6
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-126 457.6 313 68.1
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.9e-123 446.8 422 53.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.7e-116 423.7 276 71.4
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 4.7e-114 415.6 484 47.3
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 8.8e-113 411.4 303 66.0
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.0e-109 400.2 462 46.5
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.8e-108 396.0 339 56.9
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.0e-108 395.6 339 57.8
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 3.7e-103 379.4 308 59.1
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 8.6e-100 368.2 445 47.0
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.5e-99 367.5 309 59.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.0e-92 344.7 369 45.0
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.5e-91 340.1 197 75.1
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.3e-91 338.6 422 45.7
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.1e-83 314.7 433 39.0
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 7.8e-77 292.0 452 36.9
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 6.4e-63 245.7 224 54.9
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.8e-58 229.6 279 45.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.9e-55 220.3 194 55.7
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.2e-53 214.9 185 57.8
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.6e-53 214.5 119 78.2
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 3.0e-52 210.3 147 67.3
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.6e-40 169.1 237 43.9
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.9e-39 167.2 235 43.8
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.6e-37 159.8 196 46.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 7.9e-37 159.1 128 61.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 5.1e-36 156.4 106 66.0
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 6.7e-36 156.0 242 40.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 5.8e-32 142.9 94 71.3
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.9e-31 140.6 147 48.3
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.2e-26 124.4 64 82.8
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-25 122.1 235 37.9
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.4e-20 105.1 128 42.2
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.7e-20 102.8 104 52.9
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 4.8e-18 96.7 90 50.0
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.8e-17 94.7 70 64.3
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 5.1e-12 76.6 61 63.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 7.7e-08 62.8 33 81.8
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 7.7e-08 62.8 32 78.1


User provided reference genes

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