Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4294 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 5.3e-44 180.6 91 100.0
CiPaw.02G172900 Carya illinoinensis HOM05D003292 ORTHO05D004237 3.1e-36 154.8 91 80.2
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 6.9e-36 153.7 91 80.2
FAN10G0369 Fragaria x ananassa HOM05D003292 ORTHO05D004237 6.9e-36 153.7 91 80.2
FvH4_7g18990 Fragaria vesca HOM05D003292 ORTHO05D004237 2.0e-35 152.1 91 79.1
FAN06G1207 Fragaria x ananassa HOM05D003292 ORTHO05D004237 2.0e-35 152.1 91 79.1
PGR142G1202 Punica granatum HOM05D003292 ORTHO05D004237 2.0e-35 152.1 91 80.2
Sc06g0001710 Simmondsia chinensis HOM05D003292 ORTHO05D004237 2.0e-35 152.1 91 79.1
CDE06G2226 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 3.4e-35 151.4 91 79.1
Cpa.g.sc53.98 Carica papaya HOM05D003292 ORTHO05D004237 4.5e-35 151.0 91 79.1
FAN03G0674 Fragaria x ananassa HOM05D003292 ORTHO05D004237 4.5e-35 151.0 91 78.0
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 4.5e-35 151.0 91 75.8
arahy.Tifrunner.gnm1.ann1.PCB8SU Arachis hypogaea HOM05D003292 ORTHO05D004237 5.8e-35 150.6 91 79.1
arahy.Tifrunner.gnm1.ann1.V0NN3N Arachis hypogaea HOM05D003292 ORTHO05D004237 5.8e-35 150.6 91 79.1
ClCG05G021130 Citrullus lanatus HOM05D003292 ORTHO05D004237 7.6e-35 150.2 91 78.0
CsaV3_5G036130 Cucumis sativus L. HOM05D003292 ORTHO05D004237 7.6e-35 150.2 91 78.0
Duzib128G0335 Durio zibethinus HOM05D003292 ORTHO05D004237 1.3e-34 149.4 91 78.0
Manes.07G096900 Manihot esculenta HOM05D003292 ORTHO05D004237 1.3e-34 149.4 91 76.9
FAN06G4609 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.7e-34 149.1 91 78.0
Sed0016709 Sechium edule HOM05D003292 ORTHO05D004237 1.7e-34 149.1 91 76.9
TWI38G0463 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 1.7e-34 149.1 91 75.8
TAR633G2338 Trochodendron aralioides HOM05D003292 ORTHO05D004237 1.7e-34 149.1 91 75.8
Aqoxy1G01184 Aquilegia oxysepala HOM05D003292 ORTHO05D004237 2.2e-34 148.7 91 76.9
MELO3C012414.2 Cucumis melo HOM05D003292 ORTHO05D004237 2.2e-34 148.7 91 76.9
CANSAT56G2535 Cannabis sativa HOM05D003292 ORTHO05D004237 2.9e-34 148.3 91 75.8
Lj2A17G38 Lonicera japonica HOM05D003292 ORTHO05D004237 2.9e-34 148.3 91 75.8
MD01G1105500 Malus domestica HOM05D003292 ORTHO05D004237 2.9e-34 148.3 91 79.1
Manes.07G095808 Manihot esculenta HOM05D003292 ORTHO05D004237 2.9e-34 148.3 91 76.9
Potri.008G037100 Populus trichocarpa HOM05D003292 ORTHO05D004237 3.8e-34 147.9 91 74.7
Sabra08G0025000 Salix brachista HOM05D003292 ORTHO05D004237 3.8e-34 147.9 91 75.8
HPP92_013048 Vanilla planifolia HOM05D003292 ORTHO05D004237 3.8e-34 147.9 91 75.8
CSS0007603 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 4.9e-34 147.5 91 74.7
COL.COLO4_38472 Corchorus olitorius HOM05D003292 ORTHO05D004237 4.9e-34 147.5 91 78.0
Manes.07G095828 Manihot esculenta HOM05D003292 ORTHO05D004237 4.9e-34 147.5 91 75.8
TWI79G1368 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 4.9e-34 147.5 91 74.7
Glyma.10G209300 Glycine max HOM05D003292 ORTHO05D004237 6.4e-34 147.1 91 75.8
Os02g0745000 Oryza sativa ssp. japonica HOM05D003292 ORTHO05D004237 6.4e-34 147.1 91 74.7
Potri.010G225100 Populus trichocarpa HOM05D003292 ORTHO05D004237 6.4e-34 147.1 91 73.6
Gohir.D05G295900 Gossypium hirsutum HOM05D003292 ORTHO05D004237 8.4e-34 146.7 91 76.9
Gorai.009G312500 Gossypium raimondii HOM05D003292 ORTHO05D004237 8.4e-34 146.7 91 76.9
Lsat_1_v5_gn_2_99761 Lactuca sativa HOM05D003292 ORTHO05D004237 8.4e-34 146.7 91 75.8
ATR0680G328 Amborella trichopoda HOM05D003292 ORTHO05D004237 1.1e-33 146.4 91 74.7
RcHm_v2.0_Chr1g0362921 Rosa chinensis HOM05D003292 ORTHO05D004237 1.1e-33 146.4 91 76.9
Lj5g0020782 Lotus japonicus HOM05D003292 ORTHO05D004237 1.4e-33 146.0 91 76.9
MBI18_g21586_MAGBIO Magnolia biondii HOM05D003292 ORTHO05D004237 1.4e-33 146.0 91 76.9
Phvul.007G096800 Phaseolus vulgaris HOM05D003292 ORTHO05D004237 1.4e-33 146.0 91 75.8
Prupe.2G211000 Prunus persica HOM05D003292 ORTHO05D004237 1.4e-33 146.0 91 76.9
THA.LOC104823204 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 1.4e-33 146.0 91 78.0
VMungo0720G0781 Vigna mungo HOM05D003292 ORTHO05D004237 1.4e-33 146.0 91 75.8
AL3G21680 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 1.9e-33 145.6 91 79.1
CSS0003969 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 1.9e-33 145.6 91 76.9
Eucgr.G02857 Eucalyptus grandis HOM05D003292 ORTHO05D004237 1.9e-33 145.6 91 75.8
Glyma.20G181300 Glycine max HOM05D003292 ORTHO05D004237 1.9e-33 145.6 91 73.6
Gohir.A05G295200 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.9e-33 145.6 91 76.9
Gohir.D10G212500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.9e-33 145.6 91 76.9
Sp3g08620 Schrenkiella parvula HOM05D003292 ORTHO05D004237 1.9e-33 145.6 91 78.0
BcaC05g29475 Brassica carinata HOM05D003292 ORTHO05D004237 2.4e-33 145.2 91 78.0
A05p38800 Brassica napus HOM05D003292 ORTHO05D004237 2.4e-33 145.2 91 78.0
BolC5t34438H Brassica oleracea HOM05D003292 ORTHO05D004237 2.4e-33 145.2 91 78.0
BraA05t22671Z Brassica rapa HOM05D003292 ORTHO05D004237 2.4e-33 145.2 91 78.0
Carub.0003s0953 Capsella rubella HOM05D003292 ORTHO05D004237 2.4e-33 145.2 91 78.0
Thhalv10020822m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 2.4e-33 145.2 91 76.9
Nn2g11538 Nelumbo nucifera HOM05D003292 ORTHO05D004237 2.4e-33 145.2 91 75.8
AT3G10350 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 3.2e-33 144.8 91 78.0
Lalb_Chr06g0170371 Lupinus albus HOM05D003292 ORTHO05D004237 3.2e-33 144.8 91 74.7
Ca_10553_v3 Cicer arietinum L. HOM05D003292 ORTHO05D004237 4.2e-33 144.4 89 76.4
Cc02_g11130 Coffea canephora HOM05D003292 ORTHO05D004237 4.2e-33 144.4 91 73.6
BcaB04g21216 Brassica carinata HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 76.9
BcaB04g21217 Brassica carinata HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 76.9
BcaC09g48102 Brassica carinata HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 76.9
A01p41910 Brassica napus HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 76.9
BolC1t05407H Brassica oleracea HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 76.9
BraA01t04260Z Brassica rapa HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 76.9
Gorai.011G238300 Gossypium raimondii HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 75.8
Medtr1g094680 Medicago truncatula HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 74.7
Sabra10G0174000 Salix brachista HOM05D003292 ORTHO05D004237 5.5e-33 144.1 91 72.5
Atru.chr12.818 Acer truncatum HOM05D003292 ORTHO05D004237 7.1e-33 143.7 91 73.6
ECA238G1658 Erigeron canadensis HOM05D003292 ORTHO05D004237 7.1e-33 143.7 91 72.5
MSTRG.27476 Avicennia marina HOM05D003292 ORTHO05D004237 9.3e-33 143.3 91 72.5
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 9.3e-33 143.3 91 75.8
Thecc.10G078500 Theobroma cacao HOM05D003292 ORTHO05D004237 9.3e-33 143.3 91 74.7
Actinidia06753 Actinidia chinensis HOM05D003292 ORTHO05D004237 1.2e-32 142.9 91 72.5
vmacro04854 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 1.2e-32 142.9 91 72.5
Ciclev10028528m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.6e-32 142.5 91 71.4
AUR62043812 Chenopodium quinoa HOM05D003292 ORTHO05D004237 2.1e-32 142.1 91 72.5
THA.LOC104799512 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 2.1e-32 142.1 91 71.4
GSVIVG01025229001 Vitis vinifera HOM05D003292 ORTHO05D004237 2.1e-32 142.1 91 72.5
COL.COLO4_18292 Corchorus olitorius HOM05D003292 ORTHO05D004237 3.5e-32 141.4 91 72.5
Dinv32702 Davidia involucrata HOM05D003292 ORTHO05D004237 3.5e-32 141.4 91 71.4
Migut.D01651 Erythranthe guttata HOM05D003292 ORTHO05D004237 4.6e-32 141.0 91 72.5
Migut.F01967 Erythranthe guttata HOM05D003292 ORTHO05D004237 4.6e-32 141.0 91 72.5
HanXRQChr14g0452611 Helianthus annuus HOM05D003292 ORTHO05D004237 4.6e-32 141.0 91 72.5
QL08p055153 Quercus lobata HOM05D003292 ORTHO05D004237 4.6e-32 141.0 90 73.3
Rhsim02G0095100 Rhododendron simsii HOM05D003292 ORTHO05D004237 4.6e-32 141.0 91 71.4
Rhsim09G0149700 Rhododendron simsii HOM05D003292 ORTHO05D004237 4.6e-32 141.0 91 71.4
TPR.G1911 Trifolium pratense HOM05D003292 ORTHO05D004237 4.6e-32 141.0 91 72.5
C05p57830 Brassica napus HOM05D003292 ORTHO05D004237 6.0e-32 140.6 91 76.9
CiPaw.01G270600 Carya illinoinensis HOM05D003292 ORTHO05D004237 6.0e-32 140.6 91 75.8
Duzib168G0106 Durio zibethinus HOM05D003292 ORTHO05D004237 6.0e-32 140.6 89 68.5
Gohir.D05G105800 Gossypium hirsutum HOM05D003292 ORTHO05D004237 6.0e-32 140.6 91 71.4
MD07G1171700 Malus domestica HOM05D003292 ORTHO05D004237 6.0e-32 140.6 91 78.0
unitig_46.g18600 Utricularia gibba HOM05D003292 ORTHO05D004237 6.0e-32 140.6 91 74.7
EL10Ac6g14147 Beta vulgaris HOM05D003292 ORTHO05D004237 7.9e-32 140.2 91 71.4
ECA238G4082 Erigeron canadensis HOM05D003292 ORTHO05D004237 7.9e-32 140.2 91 72.5
Gorai.009G109800 Gossypium raimondii HOM05D003292 ORTHO05D004237 7.9e-32 140.2 91 71.4
PSO063G0716 Papaver somniferum HOM05D003292 ORTHO05D004237 7.9e-32 140.2 91 72.5
PSO339G5193 Papaver somniferum HOM05D003292 ORTHO05D004237 7.9e-32 140.2 91 72.5
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 1.0e-31 139.8 90 71.1
Gohir.A05G105750 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.8e-31 139.0 91 70.3
HanXRQChr14g0456221 Helianthus annuus HOM05D003292 ORTHO05D004237 1.8e-31 139.0 91 72.5
Peaxi162Scf00115g01224 Petunia axillaris HOM05D003292 ORTHO05D004237 1.8e-31 139.0 91 72.5
CAN.G1358.5 Capsicum annuum HOM05D003292 ORTHO05D004237 2.3e-31 138.7 91 72.5
vmacro03221 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 2.3e-31 138.7 91 72.5
CSS0026427 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 3.0e-31 138.3 91 71.4
CSS0026599 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 3.0e-31 138.3 91 71.4
Actinidia24123 Actinidia chinensis HOM05D003292 ORTHO05D004237 3.9e-31 137.9 91 70.3
Migut.D02251 Erythranthe guttata HOM05D003292 ORTHO05D004237 3.9e-31 137.9 91 72.5
Eucgr.J00904 Eucalyptus grandis HOM05D003292 ORTHO05D004237 8.7e-31 136.7 91 72.5
Pp3c22_13860 Physcomitrium patens HOM05D003292 ORTHO05D004237 1.1e-30 136.3 91 69.2
AL8G37320 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 1.5e-30 136.0 91 70.3
AT5G60730 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 1.5e-30 136.0 91 70.3
Thhalv10013776m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 1.5e-30 136.0 91 70.3
Thecc.10G077400 Theobroma cacao HOM05D003292 ORTHO05D037436 1.5e-30 136.0 90 71.1
Atru.chr3.3588 Acer truncatum HOM05D003292 ORTHO05D004237 1.9e-30 135.6 91 69.2
Carub.0008s2141 Capsella rubella HOM05D003292 ORTHO05D004237 1.9e-30 135.6 91 70.3
Hma1.2p1_1458F.1_g284800 Hydrangea macrophylla HOM05D003292 ORTHO05D004237 1.9e-30 135.6 89 69.7
Actinidia22439 Actinidia chinensis HOM05D003292 ORTHO05D004237 2.5e-30 135.2 91 70.3
CAN.G476.2 Capsicum annuum HOM05D003292 ORTHO05D004237 2.5e-30 135.2 91 71.4
Sopen11g028450 Solanum pennellii HOM05D003292 ORTHO05D004237 2.5e-30 135.2 91 70.3
BcaC03g13941 Brassica carinata HOM05D003292 ORTHO05D004237 4.3e-30 134.4 91 69.2
BNapus_Darmor_BZH_scaffold_38p00140 Brassica napus HOM05D003292 ORTHO05D004237 4.3e-30 134.4 91 69.2
BolC2t07224H Brassica oleracea HOM05D003292 ORTHO05D004237 4.3e-30 134.4 91 69.2
Nitab4.5_0002194g0030 Nicotiana tabacum HOM05D003292 ORTHO05D004237 4.3e-30 134.4 86 76.7
Peaxi162Scf00431g00110 Petunia axillaris HOM05D003292 ORTHO05D004237 4.3e-30 134.4 91 71.4
PGSC0003DMG400008075 Solanum tuberosum HOM05D003292 ORTHO05D004237 4.3e-30 134.4 91 70.3
Aa31LG1G12690 Aethionema arabicum HOM05D003292 ORTHO05D004237 5.6e-30 134.0 91 69.2
Sp6g22310 Schrenkiella parvula HOM05D003292 ORTHO05D004237 5.6e-30 134.0 91 69.2
Solyc11g069830.2 Solanum lycopersicum HOM05D003292 ORTHO05D004237 5.6e-30 134.0 91 70.3
Aa31LG3G2920 Aethionema arabicum HOM05D003292 ORTHO05D004237 7.4e-30 133.7 115 63.5
C02p11500 Brassica napus HOM05D003292 ORTHO05D004237 7.4e-30 133.7 91 69.2
Mapoly0037s0120 Marchantia polymorpha HOM05D003292 ORTHO05D004237 9.6e-30 133.3 91 69.2
Nitab4.5_0007148g0070 Nicotiana tabacum HOM05D003292 ORTHO05D004237 9.6e-30 133.3 100 68.0
PGR119G0151 Punica granatum HOM05D003292 ORTHO05D004237 2.1e-29 132.1 91 65.9
TPR.G6163 Trifolium pratense HOM05D003292 ORTHO05D004237 2.8e-29 131.7 91 70.3
CARHR274410 Cardamine hirsuta HOM05D003292 ORTHO05D004237 3.7e-29 131.3 91 68.1
arahy.Tifrunner.gnm1.ann1.B3ZHWF Arachis hypogaea HOM05D003292 ORTHO05D004237 4.8e-29 131.0 91 68.1
arahy.Tifrunner.gnm1.ann1.869HPH Arachis hypogaea HOM05D003292 ORTHO05D004237 6.2e-29 130.6 91 67.0
Lj3g0021738 Lotus japonicus HOM05D003292 ORTHO05D004237 8.2e-29 130.2 91 67.0
Oeu056299.2 Olea europaea HOM05D003292 ORTHO05D004237 8.2e-29 130.2 91 69.2
Psat7g144400 Pisum sativum HOM05D003292 ORTHO05D004237 8.2e-29 130.2 91 64.8
DCAR_006075 Daucus carota HOM05D003292 ORTHO05D004237 1.1e-28 129.8 107 62.6
SGA_v2.0_scaffold180G39620 Striga asiatica HOM05D003292 ORTHO05D004237 1.4e-28 129.4 91 67.0
Nitab4.5_0004479g0080 Nicotiana tabacum HOM05D003292 ORTHO05D004237 3.1e-28 128.3 97 66.0
CBR_g19921 Chara braunii HOM05D003292 ORTHO05D004237 4.0e-28 127.9 91 65.9
Nitab4.5_0004126g0040 Nicotiana tabacum HOM05D003292 ORTHO05D004237 5.3e-28 127.5 86 70.9
Medtr4g058005 Medicago truncatula HOM05D003292 ORTHO05D004237 6.9e-28 127.1 91 68.1
Lalb_Chr01g0004461 Lupinus albus HOM05D003292 ORTHO05D004237 1.2e-27 126.3 91 65.9
Pp3c19_12470 Physcomitrium patens HOM05D003292 ORTHO05D004237 1.2e-27 126.3 91 62.6
Nitab4.5_0004797g0010 Nicotiana tabacum HOM05D003292 ORTHO05D004237 3.4e-27 124.8 86 69.8
SMO143G0002 Selaginella moellendorffii HOM05D003292 ORTHO05D004237 3.4e-27 124.8 91 64.8
BcaB05g22666 Brassica carinata HOM05D003292 ORTHO05D004237 1.0e-26 123.2 85 69.4
Cc01_g10790 Coffea canephora HOM05D003292 ORTHO05D004237 3.2e-25 118.2 101 61.4
Thecc.10G078000 Theobroma cacao HOM05D003292 ORTHO05D410035 5.5e-25 117.5 89 65.2
Zm00001eb080780 Zea mays HOM05D003292 ORTHO05D004237 2.1e-24 115.5 91 53.8
Gohir.A10G204500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 6.0e-24 114.0 78 74.4
Haze_16867 Corylus avellana HOM05D003292 ORTHO05D004237 2.3e-23 112.1 76 73.7
Oeu007406.1 Olea europaea HOM05D003292 ORTHO05D004237 1.4e-20 102.8 97 51.5
Atru.chr4.431 Acer truncatum HOM05D003292 ORTHO05D004237 1.2e-19 99.8 86 60.5
DCAR_006429 Daucus carota HOM05D003292 ORTHO05D004237 1.5e-19 99.4 91 56.0
Cpa.g.sc65.13 Carica papaya HOM05D003292 ORTHO05D004237 3.8e-18 94.7 91 53.8
Lsat_1_v5_gn_2_103060 Lactuca sativa HOM05D003292 ORTHO05D004237 3.8e-18 94.7 63 71.4
MCO10G054 Micromonas commoda HOM05D003292 ORTHO05D004237 1.9e-17 92.4 89 50.6
Rhsim13G0097900 Rhododendron simsii HOM05D003292 ORTHO05D004237 4.2e-17 91.3 60 73.3
Cre05.g245158 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 3.6e-16 88.2 89 46.1
Cre24.g755097 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 3.6e-16 88.2 89 46.1
PRCOL_00003341 Prasinoderma coloniale HOM05D003292 ORTHO05D004237 4.3e-14 81.3 121 40.5
Manes.04G017100 Manihot esculenta HOM05D003292 ORTHO05D004237 9.7e-14 80.1 45 82.2
Sopen04g011540 Solanum pennellii HOM05D000006 ORTHO05D000001 3.1e-12 75.1 49 69.4
Solyc04g025120.2 Solanum lycopersicum HOM05D003292 ORTHO05D037436 6.9e-12 73.9 47 70.2
Solyc04g025160.3 Solanum lycopersicum HOM05D003292 ORTHO05D004237 2.6e-11 72.0 45 77.8
Sopen04g011550 Solanum pennellii HOM05D003292 ORTHO05D004237 2.6e-11 72.0 45 77.8
BcaC09g50541 Brassica carinata HOM05D003292 ORTHO05D016764 2.5e-09 65.5 60 53.3
Dinv31213 Davidia involucrata HOM05D003292 ORTHO05D004237 1.1e-06 56.6 35 80.0
BcaNung01627 Brassica carinata HOM05D003292 ORTHO05D016764 7.4e-06 53.9 63 36.5
BcaNung01631 Brassica carinata HOM05D003292 ORTHO05D016764 7.4e-06 53.9 63 36.5


User provided reference genes

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