Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 0.0e+00 1133.2 588 100.0
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 2.1e-157 560.1 619 55.6
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 2.6e-144 516.5 617 50.9
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 4.3e-139 499.2 625 51.4
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 4.8e-138 495.7 612 51.8
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 2.6e-136 490.0 609 52.4
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 1.3e-135 487.6 630 50.3
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 4.2e-134 482.6 635 49.9
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 1.2e-133 481.1 618 51.5
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 6.0e-133 478.8 621 49.6
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.3e-132 477.6 633 48.0
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.3e-130 471.1 621 49.3
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.6e-130 470.7 585 52.1
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.4e-129 467.6 615 51.1
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.4e-129 466.8 626 51.1
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 6.9e-129 465.3 613 49.8
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 6.9e-129 465.3 611 50.6
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 2.0e-128 463.8 629 49.6
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 5.8e-128 462.2 627 49.3
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 5.0e-127 459.1 616 49.4
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 2.5e-126 456.8 624 49.0
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.2e-126 456.4 611 48.3
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 5.5e-126 455.7 620 49.5
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.2e-125 454.5 488 56.6
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 6.1e-125 452.2 595 49.6
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.5e-123 447.6 624 49.4
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.9e-123 447.2 608 47.5
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 2.2e-122 443.7 617 47.2
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.2e-122 443.7 624 48.4
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 3.7e-122 443.0 607 48.8
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 8.2e-122 441.8 666 46.5
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.8e-121 440.7 659 46.4
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 4.1e-121 439.5 681 45.4
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 5.3e-121 439.1 641 45.9
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 9.0e-121 438.3 652 45.4
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-120 437.2 640 47.3
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 1.7e-119 434.1 631 48.5
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.1e-118 431.4 251 90.4
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.9e-118 430.6 469 56.7
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 3.2e-118 429.9 618 48.4
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 5.1e-116 422.5 670 44.6
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 5.7e-115 419.1 686 44.3
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.7e-114 417.5 639 46.5
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.2e-114 415.2 536 52.4
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.2e-112 411.4 587 47.4
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 1.5e-112 411.0 664 43.8
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 3.4e-112 409.8 654 43.6
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 3.4e-112 409.8 582 47.3
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 4.5e-112 409.5 472 53.6
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 7.7e-112 408.7 603 45.8
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 1.3e-111 407.9 491 53.4
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 2.9e-111 406.8 654 44.6
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 1.1e-110 404.8 590 46.4
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.4e-110 404.4 603 44.8
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.9e-110 404.1 529 50.7
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.5e-110 403.7 538 50.7
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 4.2e-110 402.9 600 44.8
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.6e-109 401.0 474 53.4
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 3.6e-109 399.8 565 47.4
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 3.9e-108 396.4 520 49.4
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 3.9e-108 396.4 594 44.9
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 8.8e-108 395.2 685 42.2
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.1e-107 394.8 578 46.5
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 1.1e-107 394.8 638 43.1
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.4e-107 392.9 580 47.2
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 5.7e-107 392.5 580 47.1
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 7.4e-107 392.1 595 45.7
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.7e-106 391.0 489 52.6
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 6.3e-106 389.0 403 58.6
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 8.2e-106 388.7 627 44.0
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.1e-105 388.3 614 47.1
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.1e-105 388.3 594 44.9
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 4.1e-105 386.3 606 45.2
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 3.5e-104 383.3 641 45.4
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 4.5e-104 382.9 476 50.4
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 5.0e-103 379.4 473 50.5
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 8.5e-103 378.6 491 50.9
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 8.5e-103 378.6 573 46.8
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.5e-102 377.9 236 83.9
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 5.5e-102 375.9 581 46.1
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 5.5e-102 375.9 581 46.1
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 9.4e-102 375.2 477 51.2
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 3.6e-101 373.2 581 45.8
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.4e-100 371.3 599 43.4
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 8.8e-100 368.6 474 52.3
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 3.3e-99 366.7 773 38.2
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 3.3e-99 366.7 509 47.7
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 4.4e-99 366.3 595 43.9
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 4.1e-97 359.8 513 47.0
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 5.3e-97 359.4 746 38.6
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.6e-96 357.8 749 38.6
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 4.5e-96 356.3 479 49.3
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 5.0e-95 352.8 599 41.7
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.5e-94 351.3 603 43.3
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 7.2e-86 322.4 408 51.5
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.7e-85 320.5 380 53.7
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.0e-84 318.5 261 65.5
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.3e-79 300.8 289 57.4
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 5.0e-79 299.7 607 39.5
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 9.5e-78 295.4 620 38.4
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.5e-75 288.1 230 67.0
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.6e-69 268.1 428 44.2
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.9e-66 257.3 387 45.7
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.9e-66 257.3 387 45.7
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.2e-64 251.9 577 36.9
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 7.3e-62 242.7 239 58.2
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.5e-59 235.0 346 41.3
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 3.4e-59 233.8 243 54.3
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.9e-54 218.0 369 42.5
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.6e-48 198.4 371 41.0
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.0e-47 195.7 370 40.3
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.6e-43 181.0 162 61.1
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 7.3e-38 162.9 177 53.7
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.8e-36 158.3 129 63.6
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 3.8e-34 150.6 142 54.9
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 7.1e-33 146.4 223 47.5
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 3.1e-28 131.0 99 68.7
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 2.9e-26 124.4 147 51.7
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 6.4e-26 123.2 134 55.2
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 3.7e-21 107.5 221 38.0
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 8.4e-18 96.3 148 43.9
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 2.1e-16 91.7 351 28.2
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 8.7e-15 86.3 74 60.8
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.1e-12 77.4 161 37.9
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 6.1e-08 63.5 73 46.6
PSO210G4406 Papaver somniferum HOM05D000032 ORTHO05D005217 2.3e-07 61.6 167 31.1
Aqoxy3G00377 Aquilegia oxysepala HOM05D000032 ORTHO05D005217 5.1e-07 60.5 154 34.4
THA.LOC104806094 Tarenaya hassleriana HOM05D000032 ORTHO05D005217 8.7e-07 59.7 159 32.1
PSO832G1396 Papaver somniferum HOM05D000032 ORTHO05D005217 1.1e-06 59.3 167 31.7
MSTRG.19133 Avicennia marina HOM05D000032 ORTHO05D005217 1.5e-06 58.9 155 34.2
Gohir.D10G229300 Gossypium hirsutum HOM05D000032 ORTHO05D005217 3.3e-06 57.8 179 31.8
Gorai.011G261800 Gossypium raimondii HOM05D000032 ORTHO05D005217 3.3e-06 57.8 179 31.8
Gohir.A10G219800 Gossypium hirsutum HOM05D000032 ORTHO05D005217 4.3e-06 57.4 179 31.8
CDE10G0325 Ceratophyllum demersum HOM05D000032 ORTHO05D005217 5.7e-06 57.0 142 33.1
SEGI_23155 Sequoiadendron giganteum HOM05D000032 ORTHO05D005217 7.4e-06 56.6 211 29.4
unitig_749.g14266 Utricularia gibba HOM05D000032 ORTHO05D005217 7.4e-06 56.6 159 32.7
CDE10G0171 Ceratophyllum demersum HOM05D000032 ORTHO05D005217 9.7e-06 56.2 137 33.6


User provided reference genes

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