Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.2e-36 153.7 82 100.0
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-31 139.4 82 91.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.1e-23 112.1 82 70.7
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.7e-23 111.7 82 70.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.3e-22 109.4 82 68.3
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.3e-22 109.4 82 68.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.3e-22 108.6 80 71.2
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.9e-22 107.8 82 67.1
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 5.1e-22 107.5 82 67.1
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 8.7e-22 106.7 82 67.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.5e-21 105.9 82 65.9
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.5e-21 105.9 82 63.4
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.9e-21 105.5 82 65.9
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.9e-21 105.5 82 65.9
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 9.6e-21 103.2 82 62.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 9.6e-21 103.2 82 63.4
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 9.6e-21 103.2 79 67.1
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.3e-20 102.8 80 63.8
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.6e-20 102.4 80 66.2
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.6e-20 102.4 82 63.4
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.6e-20 102.4 80 63.8
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.6e-20 102.4 82 63.4
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 2.8e-20 101.7 82 64.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.8e-20 101.7 82 64.6
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.7e-20 101.3 82 63.4
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.7e-20 101.3 81 60.5
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.7e-20 101.3 82 62.2
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 4.8e-20 100.9 80 63.8
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 4.8e-20 100.9 77 64.9
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.8e-20 100.9 82 65.9
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.8e-20 100.9 82 65.9
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.8e-20 100.9 82 61.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 6.2e-20 100.5 81 60.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 6.2e-20 100.5 80 63.8
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 8.1e-20 100.1 80 63.8
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.4e-19 99.4 82 65.9
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.4e-19 99.4 81 59.3
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.8e-19 99.0 77 62.3
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.8e-19 99.0 81 58.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.4e-19 98.6 81 59.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.4e-19 98.6 79 63.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 3.1e-19 98.2 82 63.4
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.0e-19 97.8 79 62.0
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 4.0e-19 97.8 82 59.8
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.0e-19 97.8 79 60.8
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.3e-19 97.4 82 57.3
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.3e-19 97.4 82 61.0
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 5.3e-19 97.4 82 61.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 9.0e-19 96.7 81 58.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.2e-18 96.3 82 58.5
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.2e-18 96.3 80 61.2
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.5e-18 95.9 82 59.8
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.5e-18 95.9 82 59.8
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.5e-18 95.9 82 61.0
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.5e-18 95.9 82 59.8
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.0e-18 95.5 82 59.8
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.0e-18 95.5 82 62.2
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 2.0e-18 95.5 80 61.2
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.6e-18 95.1 91 58.2
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.6e-18 95.1 82 59.8
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 2.6e-18 95.1 79 59.5
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.4e-18 94.7 79 58.2
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 3.4e-18 94.7 82 61.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.4e-18 94.7 79 60.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.4e-18 94.7 80 61.2
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.4e-18 94.7 79 60.8
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 4.5e-18 94.4 82 62.2
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 4.5e-18 94.4 82 62.2
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 4.5e-18 94.4 82 58.5
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 4.5e-18 94.4 82 58.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 4.5e-18 94.4 81 61.7
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 5.8e-18 94.0 82 62.2
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 5.8e-18 94.0 82 62.2
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 7.6e-18 93.6 82 56.1
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 7.6e-18 93.6 77 59.7
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.0e-17 93.2 83 56.6
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.0e-17 93.2 82 56.1
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.0e-17 93.2 82 61.0
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-17 93.2 79 55.7
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-17 92.8 79 58.2
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.3e-17 92.8 77 62.3
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.3e-17 92.8 82 53.7
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.7e-17 92.4 79 60.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.7e-17 92.4 82 62.2
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 2.2e-17 92.0 79 55.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.2e-17 92.0 79 54.4
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.9e-17 91.7 79 53.2
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.9e-17 91.7 81 59.3
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 3.8e-17 91.3 87 55.2
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.9e-17 90.9 79 54.4
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.5e-17 90.5 79 57.0
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.5e-17 90.5 82 59.8
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 6.5e-17 90.5 79 57.0
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.4e-17 90.1 79 54.4
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 8.4e-17 90.1 82 53.7
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.1e-16 89.7 82 57.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.4e-16 89.4 63 68.3
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.9e-16 89.0 90 52.2
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.9e-16 89.0 90 52.2
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.9e-16 89.0 79 59.5
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.9e-16 89.0 82 53.7
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 2.5e-16 88.6 79 51.9
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.5e-16 88.6 79 51.9
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 3.2e-16 88.2 82 54.9
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.2e-16 87.8 82 58.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 5.5e-16 87.4 82 51.2
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 5.5e-16 87.4 79 53.2
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 9.3e-16 86.7 80 57.5
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.6e-15 85.9 63 65.1
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.6e-15 85.9 78 50.0
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 3.5e-15 84.7 63 63.5
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 7.9e-15 83.6 79 50.6
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 7.9e-15 83.6 79 50.6
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 7.9e-15 83.6 77 55.8
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.0e-14 83.2 78 51.3
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.8e-14 82.4 63 63.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.3e-14 82.0 63 60.3
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.0e-14 81.6 79 48.1
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 3.9e-14 81.3 63 61.9
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.7e-14 80.5 79 48.1
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.1e-13 79.7 65 61.5
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.1e-12 75.5 63 57.1
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.1e-12 75.5 79 49.4
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.7e-12 74.7 75 49.3
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.7e-12 74.7 75 49.3
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 8.2e-12 73.6 63 55.6
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.4e-11 72.0 69 52.2
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 4.0e-11 71.2 63 50.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.5e-10 69.3 63 50.8
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.3e-09 66.2 76 44.7
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.2e-09 65.5 79 43.0
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 2.2e-09 65.5 63 50.8
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.4e-09 63.5 76 43.4
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 2.5e-08 62.0 76 47.4
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 5.5e-08 60.8 76 44.7
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.5e-08 60.8 76 42.1
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.1e-08 60.5 49 65.3
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.6e-07 59.3 76 39.5
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.5e-07 58.2 76 43.4
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.0e-06 55.1 87 37.9
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 3.9e-06 54.7 59 54.2
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.7e-06 53.9 76 38.2


User provided reference genes

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