Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4229 Ceratophyllum demersum HOM05D003355 ORTHO05D028453 4.5e-61 237.7 113 100.0
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 6.5e-44 180.6 114 83.3
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 4.5e-37 157.9 106 77.4
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 2.2e-36 155.6 106 75.5
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 2.9e-36 155.2 112 72.3
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 1.5e-35 152.9 108 73.1
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 3.2e-35 151.8 113 69.0
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 4.2e-35 151.4 120 69.2
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 1.2e-34 149.8 115 68.7
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 2.1e-34 149.1 112 69.6
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 2.8e-34 148.7 119 69.7
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 2.8e-34 148.7 112 68.8
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 3.6e-34 148.3 109 72.5
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 4.7e-34 147.9 109 72.5
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 6.1e-34 147.5 112 68.8
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 8.0e-34 147.1 109 69.7
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 1.4e-33 146.4 112 70.5
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 1.4e-33 146.4 112 70.5
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 1.8e-33 146.0 108 67.6
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 2.3e-33 145.6 108 67.6
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 4.0e-33 144.8 114 67.5
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 4.0e-33 144.8 107 72.9
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 5.2e-33 144.4 118 65.3
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 5.2e-33 144.4 105 72.4
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 5.2e-33 144.4 113 66.4
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 6.8e-33 144.1 112 68.8
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.8e-33 144.1 105 68.6
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 6.8e-33 144.1 112 69.6
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 6.8e-33 144.1 112 69.6
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 6.8e-33 144.1 106 72.6
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 8.8e-33 143.7 105 72.4
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 8.8e-33 143.7 112 69.6
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 8.8e-33 143.7 115 67.8
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 8.8e-33 143.7 114 69.3
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 8.8e-33 143.7 114 67.5
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 1.2e-32 143.3 104 71.2
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 1.2e-32 143.3 114 70.2
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 1.5e-32 142.9 108 68.5
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 1.5e-32 142.9 114 70.2
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 2.6e-32 142.1 114 69.3
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.6e-32 142.1 118 67.8
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.6e-32 142.1 118 67.8
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.6e-32 142.1 118 67.8
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 2.6e-32 142.1 112 67.0
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 2.6e-32 142.1 118 68.6
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 3.4e-32 141.7 118 67.8
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 3.4e-32 141.7 101 72.3
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 3.4e-32 141.7 114 68.4
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 4.4e-32 141.4 108 65.7
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 4.4e-32 141.4 118 67.8
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 4.4e-32 141.4 101 71.3
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 5.7e-32 141.0 114 69.3
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 5.7e-32 141.0 114 69.3
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 5.7e-32 141.0 108 65.7
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 5.7e-32 141.0 118 66.9
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 7.5e-32 140.6 105 67.6
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 7.5e-32 140.6 106 68.9
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 7.5e-32 140.6 114 68.4
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 7.5e-32 140.6 114 68.4
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 9.8e-32 140.2 111 65.8
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 9.8e-32 140.2 131 58.0
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 9.8e-32 140.2 117 66.7
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 1.3e-31 139.8 117 66.7
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 1.3e-31 139.8 109 67.0
MBI07_g21077_MAGBIO Magnolia biondii HOM05D003355 ORTHO05D006192 1.3e-31 139.8 96 68.8
QL02p103586 Quercus lobata HOM05D003355 ORTHO05D006192 1.3e-31 139.8 121 64.5
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 1.7e-31 139.4 112 68.8
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.7e-31 139.4 102 68.6
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 1.7e-31 139.4 115 67.0
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 2.8e-31 138.7 107 67.3
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 3.7e-31 138.3 102 74.5
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 3.7e-31 138.3 107 68.2
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 3.7e-31 138.3 109 67.0
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 1.1e-30 136.7 113 64.6
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 2.4e-30 135.6 108 65.7
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 2.4e-30 135.6 108 65.7
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 2.4e-30 135.6 109 66.1
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 4.1e-30 134.8 106 64.2
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 4.1e-30 134.8 112 65.2
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 5.4e-30 134.4 137 56.9
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 5.4e-30 134.4 107 66.4
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 1.2e-29 133.3 114 62.3
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 1.6e-29 132.9 114 64.0
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 1.6e-29 132.9 114 62.3
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 1.6e-29 132.9 118 64.4
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 2.0e-29 132.5 118 63.6
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 3.5e-29 131.7 114 61.4
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 4.5e-29 131.3 114 63.2
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 4.5e-29 131.3 114 61.4
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 4.5e-29 131.3 114 62.3
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 4.5e-29 131.3 114 62.3
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 7.8e-29 130.6 114 60.5
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 7.8e-29 130.6 109 65.1
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 1.0e-28 130.2 110 64.5
QL01p011915 Quercus lobata HOM05D003355 ORTHO05D006192 1.3e-28 129.8 120 63.3
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 1.7e-28 129.4 114 63.2
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 2.9e-28 128.6 117 64.1
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 5.0e-28 127.9 114 64.0
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 6.6e-28 127.5 109 63.3
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 6.6e-28 127.5 108 64.8
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 6.6e-28 127.5 114 61.4
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 1.9e-27 125.9 115 61.7
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 1.9e-27 125.9 114 58.8
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 1.9e-27 125.9 114 58.8
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 3.3e-27 125.2 114 60.5
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 3.3e-27 125.2 107 62.6
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 2.8e-26 122.1 108 64.8
Os01g0713800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 8.0e-26 120.6 94 66.0
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 8.0e-26 120.6 98 65.3
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 4.0e-25 118.2 113 59.3
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 1.2e-24 116.7 198 39.4
CAN.G322.12 Capsicum annuum HOM05D003355 ORTHO05D006192 7.5e-24 114.0 105 58.1
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 8.3e-23 110.5 113 57.5
CDE07G1846 Ceratophyllum demersum HOM05D003355 ORTHO05D028453 4.1e-22 108.2 73 72.6
BolC3t13633H Brassica oleracea HOM05D003355 ORTHO05D006192 7.0e-22 107.5 120 54.2
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 1.2e-21 106.7 107 56.1
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 2.7e-21 105.5 102 58.8
BraA03t10346Z Brassica rapa HOM05D003355 ORTHO05D006192 7.8e-21 104.0 113 53.1
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 3.0e-20 102.1 99 58.6
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 1.5e-19 99.8 88 56.8
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 2.5e-19 99.0 88 55.7
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 2.8e-18 95.5 98 51.0
BcaB05g21712 Brassica carinata HOM05D003355 ORTHO05D006192 3.6e-18 95.1 88 56.8
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 8.9e-17 90.5 114 50.0
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 2.9e-15 85.5 82 58.5
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 2.9e-15 85.5 45 93.3
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 2.9e-15 85.5 95 49.5
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 3.7e-15 85.1 56 80.4
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 3.7e-15 85.1 84 53.6
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 2.4e-14 82.4 56 80.4
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 5.4e-14 81.3 56 78.6
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 2.0e-13 79.3 56 76.8
CAN.G7756.1 Capsicum annuum HOM05D003355 ORTHO05D028453 2.7e-13 79.0 44 79.5
Cfa024749 Carpinus fangiana HOM05D003355 ORTHO05D006192 1.0e-12 77.0 100 45.0
unitig_46.g18518 Utricularia gibba HOM05D003355 ORTHO05D028453 1.0e-12 77.0 65 56.9
Actinidia29266 Actinidia chinensis HOM05D003355 ORTHO05D006192 5.0e-12 74.7 60 68.3
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 6.2e-10 67.8 43 69.8
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 1.1e-09 67.0 99 47.5
Sed0008456 Sechium edule HOM05D003355 ORTHO05D006192 1.1e-06 57.0 33 81.8
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 2.4e-06 55.8 30 90.0
Lsat_1_v5_gn_4_108400 Lactuca sativa HOM05D003355 ORTHO05D005088 7.1e-06 54.3 48 60.4


User provided reference genes

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