Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.3e-163 579.7 295 100.0
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.8e-105 384.4 329 59.3
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.1e-102 376.3 435 48.3
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.0e-102 374.4 436 47.0
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 8.9e-101 370.9 432 47.7
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 9.8e-100 367.5 430 48.1
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.3e-99 367.1 450 46.4
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.7e-99 366.7 433 48.0
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.2e-99 366.3 432 46.1
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.9e-99 365.9 434 45.9
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.9e-99 365.9 436 45.9
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 4.9e-99 365.2 424 46.9
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 4.9e-99 365.2 451 46.6
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 8.3e-99 364.4 433 46.9
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 8.3e-99 364.4 451 46.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.1e-98 364.0 435 46.2
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.1e-98 364.0 435 46.2
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.4e-98 362.8 426 48.1
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.2e-98 362.5 430 46.3
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.2e-98 362.5 451 45.9
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 4.1e-98 362.1 424 48.3
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 4.1e-98 362.1 424 47.2
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 4.1e-98 362.1 438 46.3
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.1e-98 362.1 422 46.9
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 7.0e-98 361.3 425 45.9
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.0e-98 361.3 432 47.0
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 9.2e-98 360.9 434 46.3
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.2e-97 360.5 439 46.5
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.6e-97 360.1 425 46.4
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.6e-97 360.1 436 46.1
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.1e-97 359.8 427 46.8
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.1e-97 359.8 425 45.9
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.6e-97 358.6 435 45.7
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 6.0e-97 358.2 424 46.7
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 7.8e-97 357.8 432 46.8
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 7.8e-97 357.8 427 47.1
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.3e-96 357.1 427 46.1
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.3e-96 357.1 458 45.4
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.3e-96 357.1 437 46.2
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.7e-96 356.7 422 47.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.7e-96 356.7 422 47.6
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 2.3e-96 356.3 442 45.2
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 3.0e-96 355.9 425 47.1
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 3.0e-96 355.9 437 45.8
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 3.0e-96 355.9 437 45.1
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 3.9e-96 355.5 442 45.9
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 5.1e-96 355.1 433 45.7
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 5.1e-96 355.1 423 46.6
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 6.6e-96 354.8 424 45.3
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 8.6e-96 354.4 434 44.9
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 8.6e-96 354.4 424 47.2
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.1e-95 354.0 437 45.5
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.1e-95 354.0 438 45.2
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.5e-95 353.6 435 45.7
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.5e-95 353.6 439 45.6
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.5e-95 353.6 422 47.2
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.9e-95 353.2 444 46.2
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 3.3e-95 352.4 425 44.9
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.3e-95 352.1 439 46.2
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.3e-95 352.1 433 46.0
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 5.6e-95 351.7 426 46.0
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 5.6e-95 351.7 427 46.6
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 5.6e-95 351.7 436 45.2
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 5.6e-95 351.7 443 45.1
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.3e-95 351.3 423 46.6
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.3e-95 351.3 423 46.6
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 9.5e-95 350.9 425 46.4
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.5e-95 350.9 423 47.0
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.5e-95 350.9 423 47.0
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.2e-94 350.5 423 46.8
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.2e-94 350.5 434 46.5
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.6e-94 350.1 425 45.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.6e-94 350.1 451 44.1
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.1e-94 349.7 425 45.2
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.1e-94 349.7 425 44.7
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.1e-94 349.7 422 46.9
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.8e-94 349.4 427 46.1
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 3.6e-94 349.0 435 45.1
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 6.2e-94 348.2 433 45.0
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 6.2e-94 348.2 424 46.2
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.1e-94 347.8 436 43.8
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.1e-94 347.8 436 43.8
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 8.1e-94 347.8 433 45.0
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 8.1e-94 347.8 424 45.0
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 8.1e-94 347.8 439 44.4
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 8.1e-94 347.8 435 46.4
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-93 347.4 433 45.5
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-93 347.1 436 46.1
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.8e-93 346.7 424 45.0
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.8e-93 346.7 449 43.7
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.8e-93 346.7 435 45.7
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.8e-93 346.7 439 45.1
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.3e-93 346.3 438 44.5
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.2e-93 345.1 436 45.4
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 5.2e-93 345.1 424 44.8
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 5.2e-93 345.1 436 44.5
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 5.2e-93 345.1 434 45.9
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.8e-93 344.7 435 46.2
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 8.9e-93 344.4 424 46.0
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 8.9e-93 344.4 425 45.2
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.5e-92 343.6 429 46.9
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.4e-92 342.4 423 46.3
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 4.4e-92 342.0 458 44.1
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 4.4e-92 342.0 423 45.4
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 7.5e-92 341.3 423 46.3
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.5e-92 341.3 421 44.7
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.3e-91 340.5 436 44.5
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.7e-91 340.1 439 44.0
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 3.7e-91 339.0 439 43.7
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 4.9e-91 338.6 435 44.8
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.4e-91 338.2 437 43.5
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 8.3e-91 337.8 436 43.8
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 8.3e-91 337.8 433 45.0
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.1e-90 337.4 432 45.4
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-90 337.0 423 45.2
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 1.4e-90 337.0 438 43.8
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.4e-90 337.0 429 45.5
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.4e-90 336.3 453 43.0
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.2e-90 335.9 423 45.4
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 9.2e-90 334.3 426 45.5
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 9.2e-90 334.3 425 44.5
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.6e-89 333.6 420 46.7
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 2.1e-89 333.2 438 42.7
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 2.7e-89 332.8 431 44.8
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 3.5e-89 332.4 446 43.0
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.6e-88 328.2 372 49.2
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.1e-87 327.4 432 44.9
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.1e-87 327.4 447 41.8
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-87 327.4 383 46.0
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.5e-87 326.2 414 45.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 9.5e-87 324.3 419 44.6
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 8.1e-86 321.2 424 42.7
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 3.1e-85 319.3 203 73.9
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.6e-84 314.7 203 71.9
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.6e-84 314.7 407 45.2
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.2e-82 309.3 411 43.1
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.6e-81 307.0 423 43.7
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.5e-81 305.8 411 42.6
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 3.5e-81 305.8 190 74.7
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 3.5e-81 305.8 423 41.6
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.7e-80 303.5 201 71.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.3e-80 303.1 407 42.5
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.8e-77 293.5 191 73.8
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.4e-75 285.0 191 71.7
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 4.6e-73 278.9 236 59.3
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.5e-71 273.9 364 43.7
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-68 263.5 163 74.8
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 4.5e-68 262.3 384 39.8
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-66 257.7 423 38.1
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 4.2e-66 255.8 371 40.4
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 5.4e-66 255.4 418 36.4
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 4.0e-61 239.2 143 75.5
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 8.4e-59 231.5 417 35.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.6e-57 227.3 191 60.7
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.6e-54 217.2 439 33.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 8.2e-46 188.3 426 29.1
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.8e-45 187.2 279 41.6
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.1e-45 186.4 159 62.9
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 5.3e-45 185.7 278 39.9
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 2.9e-43 179.9 119 73.1
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.5e-42 176.8 113 69.9
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-34 151.4 93 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.6e-33 146.4 197 44.2
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 6.7e-24 115.5 76 69.7
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.6e-23 113.6 273 30.8
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.3e-22 111.3 281 30.6
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.7e-14 84.3 61 70.5
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.7e-11 74.3 44 68.2
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.5e-10 71.2 55 63.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 6.8e-08 62.4 147 33.3
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.0e-07 60.8 43 72.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 2.0e-07 60.8 147 33.3
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.4e-07 59.7 43 69.8
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 3.7e-06 56.6 148 33.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 8.3e-06 55.5 147 29.9


User provided reference genes

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