Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 8.4e-178 627.5 472 100.0
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 3.5e-30 137.1 470 48.3
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 6.1e-27 126.3 445 49.9
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 5.7e-25 119.8 485 44.7
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 2.8e-24 117.5 485 48.9
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.0e-21 109.0 501 35.3
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 1.3e-21 108.6 277 34.3
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.9e-21 107.5 274 36.5
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 5.0e-21 106.7 513 45.6
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 8.5e-21 105.9 266 33.1
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.9e-20 104.8 518 44.6
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 3.2e-20 104.0 518 44.6
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 9.4e-20 102.4 490 43.1
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 9.4e-20 102.4 504 44.2
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 1.2e-19 102.1 494 45.7
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.6e-19 101.7 482 46.9
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 2.7e-19 100.9 489 39.5
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 4.7e-19 100.1 358 54.2
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 6.1e-19 99.8 477 30.8
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 5.2e-18 96.7 273 33.3
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 5.2e-18 96.7 473 45.5
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 6.8e-18 96.3 275 36.0
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 6.8e-18 96.3 271 33.2
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 6.8e-18 96.3 478 39.1
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 4.4e-17 93.6 292 32.5
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 5.7e-17 93.2 491 35.4
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 9.8e-17 92.4 472 46.4
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 9.8e-17 92.4 479 45.3
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.7e-16 91.7 470 44.0
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 2.8e-16 90.9 266 33.8
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.8e-16 90.9 473 43.3
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 3.7e-16 90.5 478 46.9
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.7e-16 90.5 478 45.4
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 3.7e-16 90.5 479 37.2
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 6.3e-16 89.7 484 44.0
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 8.3e-16 89.4 483 35.8
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 8.3e-16 89.4 480 41.7
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.4e-15 88.6 479 45.1
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 1.4e-15 88.6 472 47.0
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 1.8e-15 88.2 503 39.4
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 3.1e-15 87.4 478 32.8
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 4.1e-15 87.0 89 55.1
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 7.0e-15 86.3 477 35.2
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 9.1e-15 85.9 487 45.2
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 7.7e-14 82.8 481 45.1
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 7.7e-14 82.8 490 41.6
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.0e-13 82.4 274 31.8
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.7e-13 81.6 292 32.5
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 2.9e-13 80.9 307 30.6
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 5.0e-13 80.1 267 32.6
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 6.6e-13 79.7 307 28.7
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 8.6e-13 79.3 498 43.4
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 8.6e-13 79.3 265 29.4
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 8.6e-13 79.3 490 45.1
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.5e-12 78.6 483 38.7
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.5e-12 77.8 506 38.7
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 9.5e-12 75.9 482 44.4
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 2.8e-11 74.3 484 44.8
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 3.6e-11 73.9 264 30.3
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 4.7e-11 73.6 494 27.3
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 6.1e-11 73.2 484 39.5
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 8.0e-11 72.8 501 44.7
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 1.0e-10 72.4 481 44.9
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 1.0e-10 72.4 484 37.6
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 1.0e-10 72.4 275 34.2
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 2.3e-10 71.2 478 45.4
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 5.2e-10 70.1 491 46.0
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 8.9e-10 69.3 494 45.1
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 2.0e-09 68.2 276 30.8
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 7.5e-09 66.2 287 34.1
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 9.8e-09 65.9 504 43.1
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 1.3e-08 65.5 491 44.8
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 2.8e-08 64.3 341 27.3
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 3.7e-08 63.9 342 27.8
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 6.3e-08 63.2 62 50.0
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 8.3e-08 62.8 474 34.8
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 1.4e-07 62.0 300 42.3
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 1.4e-07 62.0 264 29.2
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 1.8e-07 61.6 483 43.1
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 3.2e-07 60.8 488 44.7
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 3.2e-07 60.8 481 41.4
CBR_g45402 Chara braunii HOM05D022173 ORTHO05D008520 4.1e-07 60.5 266 51.9
arahy.Tifrunner.gnm1.ann1.28YW2N Arachis hypogaea HOM05D033635 ORTHO05D031606 7.0e-07 59.7 56 55.4
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 7.0e-07 59.7 282 30.1
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.7e-06 57.8 51 56.9
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 3.5e-06 57.4 333 45.0


User provided reference genes

Program Settings