Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 6.4e-79 297.4 151 100.0
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 7.4e-59 230.7 129 93.0
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 4.3e-43 178.3 122 73.0
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 9.6e-43 177.2 119 76.5
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.3e-42 176.8 125 72.8
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.1e-42 176.0 147 61.9
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.4e-41 173.3 119 75.6
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.8e-41 172.9 117 76.1
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.4e-41 172.6 117 75.2
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.4e-41 172.6 121 71.9
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 3.1e-41 172.2 121 73.6
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 3.1e-41 172.2 120 71.7
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.1e-41 172.2 120 71.7
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.1e-41 171.8 120 71.7
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 4.1e-41 171.8 121 71.9
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 4.1e-41 171.8 120 73.3
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.1e-41 171.8 121 71.1
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 4.1e-41 171.8 121 71.9
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 6.9e-41 171.0 120 72.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.9e-41 171.0 121 72.7
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.9e-41 171.0 120 71.7
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 9.0e-41 170.6 120 70.8
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.2e-40 170.2 119 72.3
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.2e-40 170.2 120 70.0
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-40 170.2 120 70.8
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 1.5e-40 169.9 121 71.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.5e-40 169.9 119 70.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.5e-40 169.9 119 71.4
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.6e-40 169.1 119 72.3
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.4e-40 168.7 121 70.2
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.4e-40 168.7 119 71.4
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 4.5e-40 168.3 121 68.6
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 4.5e-40 168.3 121 70.2
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 4.5e-40 168.3 119 70.6
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 5.9e-40 167.9 121 69.4
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 5.9e-40 167.9 119 71.4
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 5.9e-40 167.9 121 71.1
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 5.9e-40 167.9 120 71.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 5.9e-40 167.9 119 69.7
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.6e-40 167.5 121 69.4
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.6e-40 167.5 121 69.4
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.6e-40 167.5 120 70.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 7.6e-40 167.5 119 71.4
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.0e-39 167.2 121 71.1
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-39 166.8 121 70.2
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 1.3e-39 166.8 119 69.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.3e-39 166.8 119 70.6
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.7e-39 166.4 121 69.4
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.7e-39 166.4 120 69.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.7e-39 166.4 120 69.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.7e-39 166.4 120 69.2
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.7e-39 166.4 119 73.9
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.7e-39 166.4 120 69.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 2.2e-39 166.0 120 69.2
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 2.2e-39 166.0 120 69.2
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 2.2e-39 166.0 119 70.6
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 2.2e-39 166.0 119 72.3
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.2e-39 166.0 119 70.6
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-39 165.6 121 70.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.9e-39 165.6 119 70.6
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.9e-39 165.6 121 68.6
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 3.8e-39 165.2 118 70.3
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 3.8e-39 165.2 118 70.3
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 5.0e-39 164.9 118 70.3
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 5.0e-39 164.9 119 69.7
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 5.0e-39 164.9 119 72.3
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 5.0e-39 164.9 118 72.0
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 5.0e-39 164.9 115 70.4
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.5e-39 164.5 121 69.4
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 8.5e-39 164.1 117 70.9
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.1e-38 163.7 107 78.5
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.4e-38 163.3 120 67.5
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.4e-38 163.3 121 67.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.5e-38 162.5 119 68.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 2.5e-38 162.5 119 67.2
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.2e-38 162.2 118 70.3
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.2e-38 162.2 123 65.9
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 3.2e-38 162.2 119 68.9
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.2e-38 162.2 119 72.3
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-38 162.2 118 69.5
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 4.2e-38 161.8 123 67.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 5.5e-38 161.4 119 67.2
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 7.2e-38 161.0 116 69.8
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 7.2e-38 161.0 118 69.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.2e-38 161.0 119 71.4
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 9.3e-38 160.6 116 69.8
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 9.3e-38 160.6 118 67.8
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.2e-37 160.2 114 71.9
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.2e-37 160.2 120 69.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.6e-37 159.8 119 68.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.1e-37 159.5 119 66.4
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.6e-37 158.7 121 66.9
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 4.6e-37 158.3 116 69.8
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.0e-36 157.1 107 74.8
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.0e-36 157.1 121 64.5
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.3e-36 156.8 117 68.4
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 3.9e-36 155.2 120 64.2
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 3.9e-36 155.2 120 64.2
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 3.9e-36 155.2 117 69.2
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 5.1e-36 154.8 117 66.7
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 6.7e-36 154.5 119 63.0
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 8.7e-36 154.1 107 72.0
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.5e-35 152.5 107 71.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 3.3e-35 152.1 120 63.3
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 3.3e-35 152.1 118 65.3
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 4.3e-35 151.8 115 66.1
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.6e-34 149.8 118 70.3
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.8e-34 148.3 108 71.3
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 6.3e-34 147.9 110 72.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 6.3e-34 147.9 98 79.6
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 6.3e-34 147.9 118 65.3
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.4e-33 146.7 120 67.5
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.4e-33 146.7 116 63.8
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-32 143.3 99 74.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.5e-32 143.3 98 77.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 5.9e-32 141.4 98 74.5
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 8.5e-31 137.5 103 67.0
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.4e-30 136.7 114 63.2
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 4.2e-30 135.2 104 68.3
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.6e-29 133.3 101 70.3
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.6e-29 133.3 101 70.3
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.6e-29 132.1 119 62.2
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 7.9e-29 131.0 90 72.2
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 7.9e-29 131.0 109 63.3
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.0e-28 130.6 99 63.6
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.4e-28 130.2 118 54.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 3.0e-28 129.0 96 70.8
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 5.7e-27 124.8 117 59.8
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.2e-26 120.9 86 74.4
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-25 120.2 100 63.0
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.8e-25 119.8 104 60.6
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 6.9e-25 117.9 104 60.6
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 7.7e-24 114.4 80 70.0
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.3e-23 113.6 115 52.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.1e-22 110.5 119 48.7
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.5e-22 109.4 113 48.7
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.2e-22 107.8 113 51.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 7.2e-22 107.8 120 49.2
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 7.2e-22 107.8 113 48.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.2e-21 107.1 88 62.5
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.6e-21 106.7 119 51.3
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.1e-21 106.3 116 49.1
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 2.7e-21 105.9 84 66.7
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 2.7e-21 105.9 79 64.6
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.7e-21 105.1 117 48.7
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.0e-20 104.0 92 54.3
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.8e-20 103.2 126 44.4
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 3.9e-20 102.1 88 63.6
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 8.8e-20 100.9 114 45.6
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.7e-18 96.7 103 49.5
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.8e-18 95.9 121 41.3
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.8e-18 95.1 72 72.2
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 4.1e-17 92.0 61 72.1
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.5e-11 73.6 56 62.5
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.1e-09 65.9 67 52.2
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 2.9e-07 59.3 56 50.0


User provided reference genes

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